{"id":"W4415461881","doi":"10.1002/csc2.70177","title":"De novo transcriptome assembly and candidate gene discovery for high seedling vigor in cicer milkvetch ( <i>Astragalus cicer</i> L.)","year":2025,"lang":"en","type":"article","venue":"Crop Science","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatchewan Ministry of Agriculture; University of Saskatchewan","funders":"Ministry of Agriculture - Saskatchewan","keywords":"Seedling; Germination; Candidate gene; Transcriptome; Gene; Population; Genetic variation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005884169,0.0001367094,0.0001536815,0.0001121618,0.000145023,0.00008625275,0.0003153243,0.00009910401,0.000001205406],"category_scores_gemma":[0.0001735551,0.0001252345,0.0000310687,0.0003035171,0.0004580783,0.00002228105,0.000103125,0.00007969284,6.295786e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005165821,"about_ca_system_score_gemma":0.0004119448,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001310812,"about_ca_topic_score_gemma":0.0001421583,"domain_scores_codex":[0.9985576,0.00002941969,0.0001709678,0.0007191458,0.00008345902,0.0004393729],"domain_scores_gemma":[0.9995256,0.00002042751,0.00004360759,0.0002735044,0.00007334819,0.00006350074],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001107527,0.00002582684,0.009241437,0.0000223188,0.000009579223,0.000004370369,0.00004477326,0.00005516976,0.9893953,0.0002626398,0.00007520722,0.0007526222],"study_design_scores_gemma":[0.0005657988,0.0001088875,0.06147587,0.00001965001,0.00001248074,0.00003934644,0.00003836286,0.00009413475,0.9341561,0.0001889932,0.00313349,0.0001668377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898514,0.0006736369,0.008202899,0.000391398,0.0003179346,0.0002512292,0.00008789199,0.000008179258,0.000215406],"genre_scores_gemma":[0.9966353,0.00009710313,0.002000146,0.0005065023,0.000094271,0.00003536452,0.00003442002,0.000007414452,0.0005894889],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05523916,"threshold_uncertainty_score":0.5106915,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007246278273404388,"score_gpt":0.2654027352968393,"score_spread":0.2581564570234349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}