{"id":"W4415537071","doi":"10.1093/hr/uhaf282","title":"The pangenome enhances the understanding of the genetic diversity of papaya","year":2025,"lang":"en","type":"article","venue":"Horticulture Research","topic":"Banana Cultivation and Research","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Guangzhou Municipal Science and Technology Project; Guangdong Academy of Agricultural Sciences; National Natural Science Foundation of China","keywords":"Genetic diversity; Gene; Genome; Phenotype; Meristem; Genetic resources; Genetic variation; Gene pool","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001150304,0.00006114983,0.00009336993,0.00001170043,0.002044726,0.00005403466,0.00091621,0.00006327932,0.00006456143],"category_scores_gemma":[0.0003004506,0.00001164593,0.00009733857,0.001296082,0.0008585459,0.00002794829,0.0007159408,0.000288336,0.00000330994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005258244,"about_ca_system_score_gemma":0.00003160885,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003566787,"about_ca_topic_score_gemma":0.002509255,"domain_scores_codex":[0.9982018,0.0004695451,0.0001736106,0.0001424929,0.0007271125,0.0002854119],"domain_scores_gemma":[0.9985846,0.000886666,0.00005843304,0.0001299069,0.0003075701,0.00003280138],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008411697,0.0001343803,0.0562218,0.00005541895,0.0001415689,0.000001116517,0.00169632,0.00001339628,0.8509306,0.02594172,0.009321137,0.05545848],"study_design_scores_gemma":[0.00007718644,0.00006863251,0.9358799,0.0000499372,0.00001070454,4.921919e-7,0.01090109,0.00002211015,0.02880263,0.003330536,0.02080702,0.00004974134],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9765365,0.001082685,0.000004463322,0.01618402,0.00008074312,0.0004270758,0.000008988077,0.000006581979,0.005668913],"genre_scores_gemma":[0.9955297,0.0005637683,0.000003715025,0.00002973559,0.00004288168,0.0000108271,0.0000011268,3.327534e-7,0.003817885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8796581,"threshold_uncertainty_score":0.9992545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1319529639365446,"score_gpt":0.3306691717653842,"score_spread":0.1987162078288396,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}