{"id":"W4415604110","doi":"10.1094/mpmi-10-25-0145-fi","title":"Characterizing the Effector Repertoire of <i>Plasmodiophora brassicae</i> : Insights into Clubroot Pathogenesis","year":2025,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada; University of Alberta","funders":"University of Alberta; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency; Western Grains Research Foundation","keywords":"Effector; Clubroot; Repertoire; Recapitalization; Obligate; Host (biology); Functional genomics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007084423,0.0001857318,0.0002268713,0.00003508537,0.0003202444,0.00006826662,0.0003296745,0.00007684195,0.00004548451],"category_scores_gemma":[0.00004856705,0.00007282042,0.0002024669,0.0003776775,0.0000711186,0.00007514651,0.0001043396,0.0001547009,0.00002595394],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003444213,"about_ca_system_score_gemma":0.00002718627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001541048,"about_ca_topic_score_gemma":0.0008991643,"domain_scores_codex":[0.9989129,0.0001404036,0.0002955735,0.0002961652,0.0001412817,0.0002136413],"domain_scores_gemma":[0.9992799,0.0003020669,0.0001271157,0.0001559201,0.00007354795,0.00006149615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006481339,0.00009661567,0.0004504046,0.00002638175,0.00007093532,0.00002487252,0.00007165359,0.000008213712,0.9897215,0.0001130782,0.002047672,0.007303896],"study_design_scores_gemma":[0.000109222,0.00004869299,0.02017173,0.0002335426,0.00008661433,0.00002340845,0.00015773,0.00008357412,0.8004363,0.0001613792,0.1783008,0.0001870234],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995033,0.001444766,0.00007391954,0.001843087,0.0003255402,0.0002413224,0.0003011124,0.00004359257,0.0006936807],"genre_scores_gemma":[0.9980937,0.0002291884,0.00005144732,0.0009822818,0.00005441999,0.0000384007,0.0003277005,0.000001859613,0.0002209704],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1892852,"threshold_uncertainty_score":0.296953,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005674597714251185,"score_gpt":0.2099139946061604,"score_spread":0.2042393968919092,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}