{"id":"W4415641374","doi":"10.1016/j.isci.2025.113887","title":"Resource: A compendium of HLA types and expression in pediatric cancer models","year":2025,"lang":"en","type":"article","venue":"iScience","topic":"CAR-T cell therapy research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Faculty of Information Technology, Monash University; Medical Research Future Fund; National Cancer Institute; National Health and Medical Research Council; University of California; Children’s Cancer Foundation; Hudson Institute of Medical Research; Institute of Cancer Research; Robert Connor Dawes Foundation; McKenna Claire Foundation; Children's Hospital Los Angeles; St. Jude Children's Research Hospital; Royal Children's Hospital Foundation; Chordoma Foundation; McGill University; Dana-Farber Cancer Institute; Duke University; Johns Hopkins University; Murdoch Children's Research Institute; Deutsches Krebsforschungszentrum; University of Colorado; Victorian Cancer Agency; Children's Hospital of Philadelphia; Swifty Foundation; Children’s Oncology Group; Stanford University; Children's Cancer Foundation","keywords":"Human leukocyte antigen; Immunotherapy; Immune system; Pediatric cancer; Compendium; Cancer immunotherapy; Loss of heterozygosity; Antigen; Cancer; RNA splicing","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001201872,0.001344189,0.001313533,0.004084104,0.0006815604,0.001848418,0.002029964,0.001457564,0.02409952],"category_scores_gemma":[0.00400116,0.0006704959,0.001212876,0.005518504,0.0003052758,0.0008996903,0.001866504,0.001459562,0.01637649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009738374,"about_ca_system_score_gemma":0.002417281,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01061592,"about_ca_topic_score_gemma":0.0210827,"domain_scores_codex":[0.999172,0.0001466992,0.0001213462,0.0002487378,0.0002038382,0.0001074091],"domain_scores_gemma":[0.9975162,0.001041913,0.0003324105,0.0005031991,0.0003337345,0.0002726143],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007068441,0.0001215658,0.03478529,0.008139485,0.000669752,0.0009222972,0.0003093632,0.005464585,0.0177504,0.004726424,0.8665488,0.05985507],"study_design_scores_gemma":[0.0001712848,0.00007129766,0.02234975,0.0007406307,0.0003135545,0.0009056911,0.0001413346,0.002191816,0.003790793,0.002967437,0.9662817,0.00007466546],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.002429214,0.001212146,0.001637296,0.0001006219,0.00003162074,0.00002982583,0.9908891,0.001758978,0.001911165],"genre_scores_gemma":[0.003965684,0.0008061986,0.002423953,0.000106156,0.000007337641,0.0001405748,0.9918429,0.0002304487,0.0004768074],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.02409952,"threshold_uncertainty_score":0.08062094,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03187632564539686,"score_gpt":0.3540336234786924,"score_spread":0.3221572978332956,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}