{"id":"W4415673178","doi":"10.3390/microorganisms13112473","title":"Genomic Drivers of Biofilm Formation in Salmonella Enteritidis and S. Kentucky from Poultry Production","year":2025,"lang":"en","type":"article","venue":"Microorganisms","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Public Health Agency of Canada; University of Manitoba","funders":"Agriculture and Agri-Food Canada; Mitacs; Canadian Poultry Research Council","keywords":"Biofilm; Gene; Phylogenetic tree; Phenotype; Salmonella enteritidis; Nonsynonymous substitution; Strain (injury)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001419355,0.0002798086,0.0002730055,0.0007656439,0.0003379361,0.0003724401,0.0001535382,0.0002618863,0.0009082992],"category_scores_gemma":[0.0003955342,0.000203517,0.0002268791,0.0007852648,0.0002166547,0.0001301909,0.0004379656,0.0002404032,0.0001485001],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003428166,"about_ca_system_score_gemma":0.0003410988,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0164234,"about_ca_topic_score_gemma":0.02753996,"domain_scores_codex":[0.9997844,0.00001983179,0.00002410661,0.00008081711,0.00003990517,0.00005095001],"domain_scores_gemma":[0.9997311,0.00003991016,0.0001155358,0.00001848662,0.00004597729,0.00004895205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006622262,0.00009036694,0.5073195,0.0000611602,0.00007789367,0.0005283616,0.0006702871,0.0002147055,0.4850971,0.0000773164,0.00008670487,0.005114349],"study_design_scores_gemma":[0.000003188346,0.00008888134,0.9952512,0.000007282089,0.00001779671,0.0002114182,0.0004364493,0.0001827397,0.003563434,0.00001443046,0.0002189668,0.000004082178],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995763,0.00005287038,0.00005720583,0.000005238563,8.24373e-7,0.000003055362,0.0002009621,0.000001244359,0.0001021973],"genre_scores_gemma":[0.9989813,0.00003611075,0.0001566263,0.000009691117,8.842762e-7,0.000005653847,0.0006152414,0.000002444384,0.0001920737],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0164234,"threshold_uncertainty_score":0.0326556,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004087697036246526,"score_gpt":0.1985714821832376,"score_spread":0.1944837851469911,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}