{"id":"W4415723909","doi":"10.17504/protocols.io.6qpvrq652lmk/v1","title":"FreezeTB M. tuberculosis drug resistance screening assay v1","year":2025,"lang":"","type":"article","venue":"","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"British Columbia Centre on Substance Use","funders":"","keywords":"Tuberculosis; Drug resistance; Sputum; Mycobacterium tuberculosis; Drug resistant tuberculosis; Genotype; DNA sequencing; Drug; Molecular diagnostics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009026371,0.0008934247,0.0006495397,0.00108414,0.000534301,0.0005601339,0.0006792241,0.0008005961,0.004009473],"category_scores_gemma":[0.001306436,0.0005181382,0.0005012842,0.0005894776,0.0002736575,0.0003709182,0.0005702469,0.0004999766,0.002168142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002751435,"about_ca_system_score_gemma":0.0004429348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002582709,"about_ca_topic_score_gemma":0.005005568,"domain_scores_codex":[0.9983311,0.0002248806,0.0001338317,0.0005529773,0.0006408953,0.0001162255],"domain_scores_gemma":[0.9994142,0.0001203939,0.000120664,0.00009217575,0.000212656,0.00003994395],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005256989,0.0002040747,0.03574859,0.000286843,0.00005568175,0.0001719887,0.0002945489,0.0008600443,0.9256116,0.0002452852,0.002344725,0.03365087],"study_design_scores_gemma":[0.00008557181,0.002048673,0.08725163,0.0001891235,0.0002402172,0.0014051,0.000295952,0.01348657,0.8607462,0.000264184,0.03389869,0.00008807187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.8731804,0.00222679,0.07576022,0.0002959213,0.0002773204,0.002285669,0.02211019,0.006008192,0.01785528],"genre_scores_gemma":[0.7574736,0.001552045,0.1848843,0.0007219968,0.00008327061,0.002159547,0.03663164,0.0005363503,0.01595734],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.004009473,"threshold_uncertainty_score":0.01341307,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02211887475870706,"score_gpt":0.332771348171167,"score_spread":0.3106524734124599,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}