{"id":"W4415773701","doi":"10.54910/sabrao2025.57.5.2","title":"BEAN COMMON MOSAIC VIRUS (BCMV) IDENTIFICATION USING PROTEIN COAT GENE AND PHYLOGENETIC ANALYSIS","year":2025,"lang":"","type":"article","venue":"SABRAO Journal of Breeding and Genetics","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Academy of Sciences Republic of Uzbekistan","keywords":"Coat protein; Phylogenetic tree; Identification (biology); Gene; Plant virus; Mosaic virus; Coat; Phylogenetics; Virus","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001132083,0.0002911721,0.0007072339,0.0002860375,0.0008245932,0.0004378963,0.000351642,0.0001733948,0.00001901304],"category_scores_gemma":[0.0001556349,0.0001576361,0.0002023116,0.00135431,0.0004683729,0.0001245161,0.0003361918,0.000356954,0.000001032045],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006746574,"about_ca_system_score_gemma":0.00004935304,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003314424,"about_ca_topic_score_gemma":0.0004285656,"domain_scores_codex":[0.9974225,0.0002604109,0.0009398533,0.0003858277,0.0005360511,0.0004553247],"domain_scores_gemma":[0.9983824,0.0002336176,0.0006415922,0.00009924033,0.0004033,0.0002398167],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008232207,0.00008006917,0.03387118,0.00006557847,0.0009282438,0.00001438147,0.0001937557,0.0004066008,0.9132635,0.00001428638,0.0001728849,0.05090717],"study_design_scores_gemma":[0.001360949,0.002194329,0.5776063,0.0009491806,0.005423493,0.0002169935,0.002730189,0.03522172,0.3659973,0.002916104,0.004345065,0.001038394],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9561568,0.0419374,0.0002130478,0.0008868186,0.0001793169,0.0002559878,0.0003383813,0.000005824921,0.00002645731],"genre_scores_gemma":[0.9770661,0.02185966,0.0005211097,0.00006113782,0.0002731126,0.000002088968,0.00001579358,0.000002655618,0.0001983108],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5472662,"threshold_uncertainty_score":0.6428211,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04500160441081352,"score_gpt":0.2984866888377313,"score_spread":0.2534850844269178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}