{"id":"W4415881079","doi":"10.1099/mgen.0.001543","title":"Population structure of Mycobacterium avium subsp. hominissuis provides new insights into genomic evolution","year":2025,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; Manitoba Health; University of Manitoba; Western University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Genetic diversity; Genome; Pathogen; Opportunistic pathogen; Population; Human pathogen; Phylogenetics; Population structure; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004018157,0.0001306097,0.0001749544,0.0008062695,0.0001861803,0.0003450454,0.0001239369,0.0002302093,0.0005938027],"category_scores_gemma":[0.0007687085,0.00009325374,0.0001766114,0.0006067508,0.0002559391,0.0002577586,0.0002686134,0.0002692911,0.0001003587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001851466,"about_ca_system_score_gemma":0.0001251097,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001462734,"about_ca_topic_score_gemma":0.002786454,"domain_scores_codex":[0.9998518,0.00004387174,0.000006614842,0.00005998895,0.00001700318,0.00002074233],"domain_scores_gemma":[0.9997419,0.0001104162,0.00006875477,0.00002735019,0.00002794236,0.00002370431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000285485,0.00006880451,0.8153903,0.00008329389,0.0003413805,0.0004143303,0.002080291,0.008995145,0.1129088,0.00273865,0.0003239211,0.05636954],"study_design_scores_gemma":[0.00001047156,0.00009984872,0.9832529,0.0000183825,0.00006311038,0.0003764361,0.0005106049,0.01161637,0.001201718,0.00147838,0.001356839,0.00001496932],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972906,0.0001934467,0.001966014,0.00003192566,0.000001240964,0.000002742649,0.00008765783,0.000006599489,0.0004198729],"genre_scores_gemma":[0.9989428,0.00008248066,0.0007298662,0.00001401062,0.00000370357,0.000001829509,0.0001535703,0.000002948674,0.00006878668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001462734,"threshold_uncertainty_score":0.002908468,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007833479287445896,"score_gpt":0.2530146386981142,"score_spread":0.2451811594106683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}