{"id":"W4415904973","doi":"10.20944/preprints202506.2420.v2","title":"Genomic Discovery of Taxon-Specific Molecular Markers for <em>Lactobacillaceae</em> Genera","year":2025,"lang":"","type":"preprint","venue":"Preprints.org","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Phylogenetic tree; Lactobacillaceae; Indel; Phylogenetics; Identification (biology); Genus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004144206,0.0006510781,0.000552878,0.002042685,0.0004147281,0.001037171,0.00031899,0.0004887072,0.001153752],"category_scores_gemma":[0.001254838,0.00027044,0.000589753,0.002234738,0.0002418366,0.0003290416,0.0006954555,0.0005750706,0.0006977461],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003240692,"about_ca_system_score_gemma":0.0004629506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001363524,"about_ca_topic_score_gemma":0.0020154,"domain_scores_codex":[0.99962,0.00004764525,0.00003231886,0.0001468052,0.00008865157,0.00006465754],"domain_scores_gemma":[0.9990973,0.0002034492,0.0003429309,0.00007068719,0.0001673004,0.0001183555],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00101384,0.0001614231,0.09193765,0.0005711424,0.0001968107,0.0003931189,0.0004760147,0.0008788301,0.8625554,0.0006072206,0.001256395,0.03995222],"study_design_scores_gemma":[0.0001101115,0.0005763808,0.8263872,0.000303893,0.0006266257,0.001532501,0.001239847,0.01495747,0.1287946,0.0008609188,0.0245054,0.0001049359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9796981,0.00155691,0.00745893,0.000144366,0.00003990951,0.00007433265,0.008937571,0.0002823865,0.001807495],"genre_scores_gemma":[0.9541885,0.0006155508,0.02324303,0.0001569842,0.00002927306,0.0001196093,0.02067265,0.0001267153,0.0008478083],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002042685,"threshold_uncertainty_score":0.003859758,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05649896426169542,"score_gpt":0.2716647449996104,"score_spread":0.2151657807379149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}