{"id":"W4415917199","doi":"10.1128/mra.01013-25","title":"Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie ‘dead zone’","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Windsor","funders":"National Science Foundation of Sri Lanka; U.S. Department of Energy","keywords":"Hypolimnion; Metagenomics; Structural basin; Hydrology (agriculture)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001920185,0.0005000331,0.000399628,0.0007644792,0.0004995141,0.0005716629,0.0002581445,0.0003966837,0.001139757],"category_scores_gemma":[0.0003464831,0.0003646118,0.0003277292,0.0009873073,0.0002018431,0.0003417818,0.0007640022,0.0005724644,0.0005457771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002946193,"about_ca_system_score_gemma":0.0005881478,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008602371,"about_ca_topic_score_gemma":0.02956844,"domain_scores_codex":[0.9997134,0.00001796016,0.00002392589,0.0001184861,0.00006710208,0.00005907805],"domain_scores_gemma":[0.999845,0.00001734,0.00003058535,0.00002867391,0.00005509286,0.00002319455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004323316,0.00003249805,0.01208352,0.0001167113,0.00004132911,0.00007200483,0.0004168964,0.0002836901,0.9793845,0.0001077312,0.0003144163,0.00671433],"study_design_scores_gemma":[0.0000758107,0.0006130436,0.5675654,0.00006953703,0.0001887642,0.0005222529,0.001654246,0.003275638,0.3840844,0.0003220859,0.0415465,0.00008222011],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9561458,0.0003724162,0.004869824,0.00007455295,0.00002157108,0.0001036133,0.03676854,0.000150806,0.001492966],"genre_scores_gemma":[0.8153431,0.0006005919,0.04289906,0.00042255,0.00002122297,0.0004643807,0.1313712,0.000229197,0.008648767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9913976,"threshold_uncertainty_score":0.01710463,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259538593604701,"score_gpt":0.2242813553809188,"score_spread":0.2116859694448718,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}