{"id":"W4415928759","doi":"10.1099/mgen.0.001537","title":"Novel insights into the genome organization of Rhizobiaceae: identification of linear plasmids","year":2025,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Queen's University","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft","keywords":"Extrachromosomal DNA; Replicon; Plasmid; Genome; Chromosome; Circular bacterial chromosome; T-DNA Binary system; Identification (biology)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001301623,0.0002587597,0.0002622693,0.0006999599,0.0001576962,0.0004030548,0.0002033166,0.0002939171,0.0009301911],"category_scores_gemma":[0.0003008822,0.000125109,0.0002355824,0.0006048938,0.0001727306,0.0006264225,0.0003482951,0.0003672561,0.0003311504],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002038219,"about_ca_system_score_gemma":0.0003456301,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006825163,"about_ca_topic_score_gemma":0.001220281,"domain_scores_codex":[0.9999201,0.000008607612,0.000005596275,0.0000261103,0.00002164637,0.00001786787],"domain_scores_gemma":[0.9997987,0.0000579285,0.00004857504,0.00001760983,0.0000314336,0.0000456537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001862359,0.0000496015,0.01120757,0.0002877813,0.00001876393,0.0002505419,0.0002683069,0.0002420091,0.9667326,0.0003774261,0.00008163723,0.0202975],"study_design_scores_gemma":[0.00006345335,0.0009249457,0.5953359,0.0002090639,0.0002921879,0.004999499,0.002561072,0.01004393,0.3504151,0.004233107,0.03083828,0.00008348696],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9856856,0.002982145,0.008694869,0.0001816324,0.000007331627,0.00001996239,0.001113503,0.00008664027,0.001228449],"genre_scores_gemma":[0.9788588,0.001918865,0.01478307,0.0001010879,0.00001492518,0.00001399869,0.003340613,0.00002982635,0.0009388774],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009301911,"threshold_uncertainty_score":0.00311178,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00745098289051829,"score_gpt":0.1956696988709593,"score_spread":0.188218715980441,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}