{"id":"W4415963379","doi":"10.1186/s12864-025-12248-8","title":"Chromosome-scale assembly of European flax (Linum usitatissimum L.) genotypes and pangenomic analysis provide genomic tools to improve breeding","year":2025,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Phytoestrogen effects and research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","keywords":"Linum; Genome; Reference genome; Sequence assembly; Cultivar; Amplified fragment length polymorphism; Genomics; Molecular breeding; Gene pool","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000427649,0.0005878059,0.0003075685,0.001112146,0.0004949758,0.0005545964,0.0002860364,0.0004140036,0.002308038],"category_scores_gemma":[0.0004708682,0.0002566453,0.0006888053,0.000917435,0.0001587571,0.0004397276,0.0006332356,0.0005326287,0.001194712],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004548658,"about_ca_system_score_gemma":0.0004462084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003801944,"about_ca_topic_score_gemma":0.009739383,"domain_scores_codex":[0.9997515,0.00002039009,0.00002595665,0.0001208959,0.0000421371,0.00003907223],"domain_scores_gemma":[0.9997358,0.00003772896,0.0000612221,0.00005543572,0.00007299101,0.00003683831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003234846,0.00003434577,0.005970838,0.0002517848,0.00008235058,0.0001865424,0.000317493,0.0007971314,0.9607042,0.0004292453,0.0007360749,0.03016647],"study_design_scores_gemma":[0.00008912435,0.0004747265,0.3044617,0.0001949057,0.000459686,0.0009143134,0.000694418,0.01097319,0.5786368,0.001168952,0.1018177,0.0001144651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8832509,0.002160715,0.07362373,0.0002865616,0.00009997533,0.0001883266,0.03242474,0.002208995,0.00575613],"genre_scores_gemma":[0.7315892,0.001515924,0.1399586,0.0002193979,0.00003739557,0.000259548,0.1168637,0.001268869,0.008287338],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003801944,"threshold_uncertainty_score":0.007721186,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02294937105562016,"score_gpt":0.2945489306373424,"score_spread":0.2715995595817222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}