{"id":"W4416046134","doi":"10.1093/gbe/evaf192","title":"Whole-Genome Sequence of <i>Potamopyrgus antipodarum</i> —A Model System for the Maintenance of Sexual Reproduction—Reveals a Recent Whole-Genome Duplication","year":2025,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"University of Colorado Boulder; Iowa Science Foundation; Iowa State University; Colorado State University","keywords":"Asexual reproduction; Genome; Sexual reproduction; Genomics; Gene duplication; Model organism; Asexuality; Model system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007051771,0.0001775839,0.0002685584,0.00007198953,0.000197034,0.000006669357,0.0002479366,0.0002597979,0.000001252211],"category_scores_gemma":[0.0001246309,0.0001477916,0.000067905,0.0002218361,0.0003900111,0.000007028411,0.0001213288,0.00008827151,0.000002074383],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008407971,"about_ca_system_score_gemma":0.0001737816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002569271,"about_ca_topic_score_gemma":0.00002604583,"domain_scores_codex":[0.9984862,0.0000912291,0.0004982144,0.0005759588,0.00006698225,0.0002814122],"domain_scores_gemma":[0.9985785,0.00002610991,0.0003052895,0.0006349378,0.0004111167,0.00004400648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002094367,0.00004126569,0.001169167,0.0001860802,0.00009270853,5.782344e-8,0.00004626011,0.008215544,0.9835706,0.005692477,0.0001352996,0.0006411527],"study_design_scores_gemma":[0.009005991,0.005216666,0.3948141,0.0003161627,0.001507139,0.0002570182,0.004202458,0.1455515,0.03564311,0.02622825,0.3746051,0.002652464],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5792251,0.01713293,0.3980448,0.001667977,0.0004483571,0.001171819,0.002057286,0.00003011398,0.0002216618],"genre_scores_gemma":[0.9942346,0.001214704,0.001295711,0.00009698225,0.0001174787,0.00009925526,0.001245634,0.00001250725,0.001683184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9479274,"threshold_uncertainty_score":0.6026766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01461850810399308,"score_gpt":0.2648109796541214,"score_spread":0.2501924715501283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}