{"id":"W4416138134","doi":"10.1093/gbe/evag127","title":"Horizontal Gene Transfers Underpin Ribose Heterotrophy and Central Carbon Metabolism Remodeling in Gloeobacteraceae","year":2025,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Faculty of Medicine and Dentistry, University of Alberta; Shantou University Medical College; Liaoning Technical University; Sidho-Kanho-Birsha University; Fonds De La Recherche Scientifique - FNRS; William H. and Mary L. Bauman Foundation; Bundesministerium der Verteidigung; Department of Biodiversity, Conservation and Attractions; Waalse Gewest; Dutch Cardiovascular Alliance","keywords":"Horizontal gene transfer; Pentose phosphate pathway; Ribose; Gene; Cyanobacteria; Synechococcus; Heterotroph; Pentose","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001618117,0.0002204287,0.0001815969,0.0003384567,0.0003111274,0.0004460287,0.000188635,0.0003490294,0.001135105],"category_scores_gemma":[0.0002096651,0.0001477681,0.0001847136,0.0003012332,0.00041883,0.0004773911,0.0007472874,0.0003896088,0.0004473965],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003702579,"about_ca_system_score_gemma":0.000272827,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007136647,"about_ca_topic_score_gemma":0.000858658,"domain_scores_codex":[0.9998779,0.00001121874,0.000006759162,0.00004712865,0.00002329209,0.0000337189],"domain_scores_gemma":[0.9998137,0.00002540967,0.00007274776,0.00003234813,0.00002267861,0.00003323274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007827047,0.00002064455,0.008848708,0.00004985257,0.000007362061,0.0001814357,0.0002793575,0.0001127177,0.9791588,0.0005835534,0.00002955964,0.01064971],"study_design_scores_gemma":[0.00002441865,0.0003949587,0.623104,0.00009029573,0.00007274596,0.002911094,0.001904804,0.003008618,0.3554654,0.003533467,0.009431244,0.00005889743],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952394,0.000644872,0.002243556,0.00006422402,0.000003697279,0.00001036763,0.00007977616,0.00007130924,0.001642803],"genre_scores_gemma":[0.9973708,0.0002766545,0.001358938,0.00002974793,0.000002063427,0.000005477734,0.0001233008,0.00001110336,0.0008218493],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001135105,"threshold_uncertainty_score":0.003797352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003753943382124589,"score_gpt":0.2192190059288242,"score_spread":0.2154650625466996,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}