{"id":"W4416138134","doi":"10.1093/gbe/evag127","title":"Horizontal Gene Transfers Underpin Ribose Heterotrophy and Central Carbon Metabolism Remodeling in Gloeobacteraceae","year":2025,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Faculty of Medicine and Dentistry, University of Alberta; Shantou University Medical College; Liaoning Technical University; Sidho-Kanho-Birsha University; Fonds De La Recherche Scientifique - FNRS; William H. and Mary L. Bauman Foundation; Bundesministerium der Verteidigung; Department of Biodiversity, Conservation and Attractions; Waalse Gewest; Dutch Cardiovascular Alliance","keywords":"Horizontal gene transfer; Pentose phosphate pathway; Ribose; Gene; Cyanobacteria; Synechococcus; Heterotroph; Pentose","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009136525,0.0001350188,0.0001605194,0.00006112202,0.00006950338,0.000009278148,0.00006524956,0.0002186503,0.000001206505],"category_scores_gemma":[0.00001350082,0.0001294577,0.00003288346,0.0000694593,0.00007833284,0.000004507624,0.00005509153,0.00008664616,2.38081e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002813355,"about_ca_system_score_gemma":0.00005601014,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001346398,"about_ca_topic_score_gemma":0.0001292144,"domain_scores_codex":[0.9991322,0.0000545385,0.0001582322,0.0003508586,0.00002491937,0.0002792325],"domain_scores_gemma":[0.999783,0.000004454113,0.00002503184,0.0001130408,0.00001992055,0.00005453626],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001687277,0.00002055666,0.001134907,0.00001738658,0.00002521553,7.778745e-7,0.00004673988,0.00002121221,0.9955371,0.001191734,4.563256e-7,0.001835211],"study_design_scores_gemma":[0.004619792,0.001104381,0.1214082,0.0000880714,0.0001759219,0.00009004975,0.0004253576,0.003697529,0.8350178,0.02568041,0.006726222,0.0009662469],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9812592,0.006320598,0.01173162,0.0001199659,0.0002000711,0.0001585261,0.00002755638,0.00000899825,0.0001734511],"genre_scores_gemma":[0.9973382,0.002095731,0.0002716676,0.00009652832,0.00007204476,0.00001507382,0.00007535425,0.000006699459,0.0000286908],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1605193,"threshold_uncertainty_score":0.527913,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003753943382124589,"score_gpt":0.2192190059288242,"score_spread":0.2154650625466996,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}