{"id":"W4416199173","doi":"10.3390/antibiotics14111151","title":"Whole-Genome Analysis of Escherichia coli from One Health Sources: Evaluating Genetic Relatedness and Antimicrobial Resistance Carriage","year":2025,"lang":"en","type":"article","venue":"Antibiotics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; BP (Canada); University of Saskatchewan; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Beef Cattle Research Council; Alberta Beef Producers","keywords":"Jaccard index; Phylogenetic tree; Genetic diversity; Antibiotic resistance; Population; UniFrac; Context (archaeology); Carriage; Gene pool","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003632061,0.0002935712,0.0002772594,0.001443157,0.0004366508,0.0006444182,0.0002276813,0.0002864488,0.0006135821],"category_scores_gemma":[0.0006967481,0.0001116772,0.0003463713,0.002076598,0.0002536214,0.000127211,0.0003914124,0.0002711479,0.0002122534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005906789,"about_ca_system_score_gemma":0.0008918062,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04292916,"about_ca_topic_score_gemma":0.08973645,"domain_scores_codex":[0.999746,0.0000233569,0.00001403444,0.000086796,0.0000777604,0.00005201464],"domain_scores_gemma":[0.999405,0.0001001098,0.0001618587,0.00003555371,0.0002035196,0.00009389631],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003277736,0.0001042496,0.8246726,0.000263866,0.0002406829,0.0003659898,0.0009065434,0.0006745802,0.1550119,0.0000843907,0.0003858399,0.01696164],"study_design_scores_gemma":[0.000001913805,0.00005167021,0.9967469,0.000008922701,0.00003401748,0.0001866894,0.0002966357,0.000355145,0.001797694,0.00001893206,0.0004983387,0.000003200641],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958537,0.0002693974,0.00124424,0.00003146499,0.000002868324,0.00002256306,0.002210767,0.00001989636,0.0003451769],"genre_scores_gemma":[0.9872946,0.0002597617,0.005310818,0.00005675489,0.000003873473,0.00001962521,0.006539109,0.00001570764,0.0004995919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04292916,"threshold_uncertainty_score":0.08535862,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01437792341342611,"score_gpt":0.2818834089431268,"score_spread":0.2675054855297007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}