{"id":"W4416311930","doi":"10.1093/jeb/voaf137","title":"Hidden genetic diversity among <i>Blochmanniella</i> endosymbionts of closely related carpenter ant populations","year":2025,"lang":"en","type":"article","venue":"Journal of Evolutionary Biology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Howard Hughes Medical Institute; National Park Service; National Science Foundation","keywords":"Lineage (genetic); Population; Genome; Synteny; Obligate; Genetic diversity; Phylogenetics; Phylogenetic tree","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001402341,0.0001675327,0.0001963052,0.0007987022,0.0004462269,0.0004740054,0.0002441883,0.0002389469,0.0005442083],"category_scores_gemma":[0.000304223,0.000138433,0.0001367646,0.000436198,0.0003199567,0.0001659687,0.0002505343,0.0002131469,0.0001061045],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000564654,"about_ca_system_score_gemma":0.0002224747,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0236822,"about_ca_topic_score_gemma":0.04724451,"domain_scores_codex":[0.9997877,0.00001549706,0.00001105604,0.0001165835,0.00002776871,0.00004129807],"domain_scores_gemma":[0.9997787,0.00002461632,0.00007956378,0.00001454288,0.00003976651,0.00006275205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003840561,0.00007220792,0.7693117,0.00003488096,0.0001132644,0.0001286605,0.001539325,0.0001984386,0.2190782,0.0002096529,0.0001114326,0.008818132],"study_design_scores_gemma":[0.000004157653,0.00003463828,0.9976325,0.000005411237,0.00001571295,0.0000783241,0.0002887174,0.0003231589,0.001224619,0.00001957679,0.0003685986,0.000004589288],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996775,0.00003331023,0.00005889637,0.000003555386,5.006489e-7,0.000002021178,0.00007381591,0.00000225051,0.0001481584],"genre_scores_gemma":[0.9994633,0.00002287923,0.0001737921,0.000008553277,0.00000107579,0.000002665852,0.0002489093,0.000002436884,0.00007641504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0236822,"threshold_uncertainty_score":0.04708874,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01688993661715983,"score_gpt":0.2333699301670838,"score_spread":0.216479993549924,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}