{"id":"W4416385718","doi":"10.1093/genetics/iyaf205","title":"Nearly a century of discoveries in bacterial genetics and their continuing impact on the field","year":2025,"lang":"en","type":"article","venue":"Genetics","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Carleton University","funders":"","keywords":"Field (mathematics); Human genetics; Population genetics; Human evolutionary genetics; Bacterial genetics; Biological evolution; DNA Transposable Elements","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008989132,0.00006566426,0.00009715783,0.00001351677,0.00004494638,0.00000929369,0.0001511998,0.00005861116,0.0007092541],"category_scores_gemma":[0.00003134667,0.00004100934,0.00002280581,0.00006618998,0.0001676923,0.000009515431,0.0002116482,0.0001133746,0.000002987608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001299064,"about_ca_system_score_gemma":0.000007054511,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001253594,"about_ca_topic_score_gemma":0.0011623,"domain_scores_codex":[0.9995884,0.0001110553,0.00009829373,0.0000749322,0.00001935358,0.0001079972],"domain_scores_gemma":[0.9994705,0.0003084276,0.00003039798,0.000176968,0.000002308802,0.0000114549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003623224,0.0001384636,0.2437109,0.00001637064,0.00004059288,8.134127e-7,0.007054642,0.001288041,0.7182903,0.0004795562,0.006304118,0.02231383],"study_design_scores_gemma":[0.0003503656,0.0004576081,0.9200288,0.00003063868,0.000008670696,0.00000102924,0.0004448526,0.0002425758,0.05859751,0.003137607,0.01658404,0.0001163111],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985558,0.00009540644,0.0000126688,0.0003120842,0.00010521,0.00009298544,0.00001603438,0.000001621136,0.0008081264],"genre_scores_gemma":[0.999312,0.0002233485,0.00004643699,0.0003716689,0.00001215809,0.000001830708,0.000003579697,0.000002258585,0.00002674159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6763179,"threshold_uncertainty_score":0.7765834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0049197619948945,"score_gpt":0.2302580652316147,"score_spread":0.2253383032367202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}