{"id":"W4416428897","doi":"10.1101/2025.11.19.689334","title":"Latent gene network expression underlies partial re-evolution of a polyphenic trait in the worker caste of ants","year":2025,"lang":"","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Simple eye in invertebrates; Polyphenism; Phenotype; Trait; Phenome; Multicellular organism; Caste; Expression (computer science)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007087131,0.0001209628,0.0001042452,0.0002375759,0.0001389564,0.0002429005,0.0001366126,0.0002051311,0.0006802263],"category_scores_gemma":[0.0001488486,0.00009515705,0.0001824593,0.00009992059,0.0002621148,0.0001009523,0.0003177035,0.000428841,0.000130212],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001549734,"about_ca_system_score_gemma":0.00008940892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003686497,"about_ca_topic_score_gemma":0.0007158895,"domain_scores_codex":[0.9999228,0.000008326503,0.000004707603,0.0000260645,0.00001922499,0.00001903318],"domain_scores_gemma":[0.9997715,0.00003535583,0.00008977255,0.00003078665,0.00002205204,0.00005056516],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000057755,0.000008199147,0.004944275,0.00001444359,0.000007412661,0.00008953249,0.00003677688,0.0001023542,0.9935206,0.0001283442,0.00001767051,0.001072572],"study_design_scores_gemma":[0.00002357082,0.0001820371,0.740974,0.00001306008,0.00004975973,0.001743968,0.0002059539,0.008396437,0.2452053,0.0005782585,0.002604179,0.00002347454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981837,0.0001171275,0.001252207,0.00002172934,0.000002944804,0.000002405671,0.0001128787,0.00002207131,0.0002849125],"genre_scores_gemma":[0.9987308,0.00004065485,0.0005018536,0.00001642792,0.00000275236,0.000004583505,0.0001642068,0.000008144948,0.0005306007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006802263,"threshold_uncertainty_score":0.002275646,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0146553155084603,"score_gpt":0.2322566389789634,"score_spread":0.2176013234705031,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}