{"id":"W4416438692","doi":"10.1139/gen-2025-0066","title":"Revealing degradation strategy of aniline blue by <i>Lysinibacillus</i> sp. 38-6 via genomic analysis","year":2025,"lang":"en","type":"article","venue":"Genome","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Basic and Applied Basic Research Foundation of Guangdong Province","keywords":"Aniline; Degradation (telecommunications); Gene; Strain (injury); Bacteria; Genome; Biodegradation; genomic DNA","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000304173,0.0001424155,0.0002862824,0.00006654624,0.0001081466,0.00003526161,0.0002443678,0.0001171955,0.0003009829],"category_scores_gemma":[0.00002974391,0.00006857598,0.0001411548,0.001736531,0.0000425631,0.0001050316,0.00004674868,0.00009935756,0.00002495171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005947874,"about_ca_system_score_gemma":0.00001570286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005060056,"about_ca_topic_score_gemma":0.000711441,"domain_scores_codex":[0.9987594,0.00008332315,0.0004306471,0.0003264673,0.0001803486,0.0002198045],"domain_scores_gemma":[0.9994241,0.00009890026,0.0001966797,0.0001072491,0.0001150251,0.00005807171],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001434333,0.00004881947,0.001755675,0.000008168129,0.0001350995,6.290523e-7,0.00002856956,0.0007555629,0.9850666,0.00006699395,0.0002083,0.01191126],"study_design_scores_gemma":[0.0008035268,0.0004094294,0.78009,0.00003668423,0.001348476,0.000003142037,0.0009912456,0.004463059,0.1740559,0.001144395,0.03571156,0.0009425826],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969319,0.00083758,0.0008828411,0.0003992463,0.00007057647,0.0001638797,0.0002300743,0.00004834861,0.0004355349],"genre_scores_gemma":[0.9958989,0.0001486372,0.0002110198,0.0001423705,0.00007324719,0.000007880779,0.002444752,0.00000106918,0.00107212],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8110107,"threshold_uncertainty_score":0.3295552,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01052100846450201,"score_gpt":0.216253320257478,"score_spread":0.2057323117929759,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}