{"id":"W4416443125","doi":"10.5376/gab.2025.16.0004","title":"Phylogenetic Position of Durian and Comparative Genomics with Close Relatives in Malvaceae","year":2025,"lang":"","type":"article","venue":"Genomics and Applied Biology","topic":"Cocoa and Sweet Potato Agronomy","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Phylogenetic tree; Malvaceae; Genome; Comparative genomics; Genomics; Gene family; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001736246,0.0002659376,0.0005709046,0.00006326166,0.0001593213,0.00003484279,0.0001375525,0.000238639,0.00002533598],"category_scores_gemma":[0.000002513099,0.0001345356,0.00003880182,0.0002429632,0.0006421508,0.00002416424,0.0001848196,0.0001800237,0.0000020298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004459869,"about_ca_system_score_gemma":0.00004631096,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001248307,"about_ca_topic_score_gemma":0.0006590444,"domain_scores_codex":[0.9985642,0.00009018305,0.0004284214,0.0005635082,0.00003145215,0.0003221901],"domain_scores_gemma":[0.9994302,0.0001880433,0.0001974898,0.00007688384,0.00003156508,0.00007581322],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00086146,0.0001769599,0.05230987,0.00005487153,0.0001356417,0.000001864568,0.002826881,0.00004506588,0.8166215,0.09414586,0.00001180003,0.03280826],"study_design_scores_gemma":[0.001722175,0.001108618,0.9564766,0.00006424275,0.00009376871,0.00001049683,0.004317719,0.0002154962,0.01344406,0.01597876,0.006075588,0.0004924978],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992065,0.002730032,0.00001972327,0.0008394697,0.00004762233,0.0006463353,0.00003742928,0.000005210431,0.003609202],"genre_scores_gemma":[0.9977837,0.001483181,0.0004013057,0.000128168,0.00005407351,0.00002551336,0.00004745765,0.00000143382,0.00007518654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9041667,"threshold_uncertainty_score":0.5486202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01373995131725232,"score_gpt":0.2213295931687181,"score_spread":0.2075896418514657,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}