{"id":"W4416585407","doi":"10.1016/j.indcrop.2025.122338","title":"Genome-wide analysis of the WRKY transcription factor family in Perilla frutescens and the positive role of PfWRKY38, PfWRKY59, and PfWRKY78 in regulating rosmarinic acid biosynthesis","year":2025,"lang":"en","type":"article","venue":"Industrial Crops and Products","topic":"Natural Products and Biological Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia, Okanagan Campus","funders":"National Key Research and Development Program of China; Higher Education Discipline Innovation Project; Jilin Agricultural University","keywords":"WRKY protein domain; Perilla frutescens; Rosmarinic acid; Transcription factor; Gene; Gene family; Transcriptional regulation; Methyl jasmonate; Promoter","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001888693,0.0003721008,0.0003553084,0.000714121,0.0002655932,0.000226809,0.0001641352,0.0002328713,0.0006017427],"category_scores_gemma":[0.0001058744,0.0001462563,0.0005865789,0.0006261801,0.0001543507,0.0001293747,0.0002200417,0.0003800687,0.0002333413],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002741871,"about_ca_system_score_gemma":0.0002315873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001988906,"about_ca_topic_score_gemma":0.002751413,"domain_scores_codex":[0.999871,0.000007140397,0.00000769219,0.00005173754,0.00003524088,0.0000270662],"domain_scores_gemma":[0.9998959,0.00001432005,0.00003451279,0.000009809595,0.00001523891,0.00003010041],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001073804,0.00002282511,0.002384067,0.0000284389,0.00001351857,0.00007373816,0.00003444843,0.00004758619,0.9954392,0.00002471406,0.00002488187,0.001799089],"study_design_scores_gemma":[0.00007230957,0.0004433243,0.8643289,0.00001599344,0.0001641743,0.0009676243,0.0001745413,0.002397433,0.1267098,0.0001309174,0.004567992,0.00002697521],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959127,0.0006430723,0.001164693,0.00004262462,0.000004927123,0.00001888169,0.001772734,0.00004652362,0.0003937282],"genre_scores_gemma":[0.9879488,0.0005737513,0.002037511,0.00005947076,0.00001038027,0.00004010232,0.007618119,0.00002197179,0.00168995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001988906,"threshold_uncertainty_score":0.003954649,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03456528535766372,"score_gpt":0.2767306779932417,"score_spread":0.242165392635578,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}