{"id":"W4416695890","doi":"10.1128/spectrum.01803-25","title":"Phylogenomic analysis and genetic mechanisms of antifungal resistance in clinical isolates of <i>Candida glabrata</i> ( <i>Nakaseomyces glabratus</i> ) from across Canada, 2013–2020","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dr. Georges-L.-Dumont University Hospital Centre; Public Health Ontario; Newfoundland and Labrador Centre for Applied Health Research; BC Centre for Disease Control; Nova Scotia Cancer Centre; Queen Elizabeth II Health Sciences Centre; Public Health Agency of Canada; Health PEI; St. John’s Health Sciences Centre; University of Toronto; London Health Sciences Centre; Manitoba Health; Provincial Laboratory of Public Health; University of Calgary; Institut National de Santé Publique du Québec; University of Manitoba; Nova Scotia Health Authority","funders":"","keywords":"Genome; Genetic diversity; Antifungal; Drug resistance; Gene; Genetic variation; Phylogenetics; Clade; Phylogenetic tree","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001663273,0.0002624464,0.0003349163,0.001611393,0.0007982578,0.000853981,0.0002853332,0.0002060573,0.0007947602],"category_scores_gemma":[0.0004408287,0.0001260156,0.0004379596,0.002732657,0.0003366826,0.00009112795,0.000358252,0.0002903714,0.0001738618],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002584012,"about_ca_system_score_gemma":0.003078694,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6517821,"about_ca_topic_score_gemma":0.6944079,"domain_scores_codex":[0.9996959,0.00001125429,0.00001627479,0.00008794881,0.0000884999,0.0001000037],"domain_scores_gemma":[0.9996711,0.000023492,0.0000678951,0.00001397905,0.0001509402,0.00007256362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005649957,0.00007149456,0.8823545,0.000136916,0.0002025813,0.0005175906,0.001021504,0.0007748167,0.09451574,0.0001781798,0.001104552,0.01855705],"study_design_scores_gemma":[0.000004017531,0.0000230217,0.9967647,0.000009587138,0.00003493944,0.0001929671,0.0005964098,0.000458855,0.001018532,0.00001635075,0.0008758408,0.000004800832],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948418,0.0004014061,0.0002618964,0.00006129935,0.00000358249,0.00002561833,0.00373685,0.00001374442,0.0006538891],"genre_scores_gemma":[0.9920959,0.0003319637,0.0007053714,0.00006100175,0.000002852458,0.00001251027,0.006212564,0.000008139937,0.000569767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3482179,"threshold_uncertainty_score":0.7005372,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004997168697401469,"score_gpt":0.2587446412420258,"score_spread":0.2537474725446243,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}