{"id":"W4416722433","doi":"10.3390/microorganisms13122694","title":"First Isolation and Genomic Characterization of Escherichia ruysiae in Togo from a Five-Year-Old Patient with Gastroenteritis and Bloody Diarrhea","year":2025,"lang":"en","type":"article","venue":"Microorganisms","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Montreal Clinical Research Institute","funders":"","keywords":"Multilocus sequence typing; Whole genome sequencing; Virulence; Typing; Bloody diarrhea; Isolation (microbiology); Diarrhea; Clade; Identification (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008494742,0.0004643779,0.000432374,0.0006564889,0.0005968286,0.0005505179,0.0002010084,0.0007074104,0.000606684],"category_scores_gemma":[0.0008169809,0.0002616529,0.0004408804,0.0002968331,0.0002916477,0.0004057923,0.000755289,0.0007225113,0.000340833],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001778848,"about_ca_system_score_gemma":0.0002273486,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001560852,"about_ca_topic_score_gemma":0.001525317,"domain_scores_codex":[0.9998186,0.00001721176,0.00002363721,0.00004841612,0.00003683518,0.00005529911],"domain_scores_gemma":[0.9996709,0.0000524315,0.00006168562,0.00002522444,0.00005689139,0.0001328775],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"case_report","study_design_scores_codex":[0.0005413675,0.0005159667,0.4431543,0.0002134447,0.00005318936,0.4171312,0.004146935,0.0002220217,0.1155284,0.0002637959,0.001330893,0.01689852],"study_design_scores_gemma":[0.00002888034,0.001472117,0.5373689,0.0001007042,0.0001496709,0.4263483,0.006799515,0.00106484,0.01943791,0.0001655767,0.007004364,0.00005924992],"study_design_candidate":"case_report","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976822,0.0003377981,0.0006760131,0.0002894194,0.00004015353,0.00003165954,0.0001505284,0.00001261984,0.0007795142],"genre_scores_gemma":[0.9979835,0.0003288519,0.0006047377,0.0002624075,0.00006668899,0.000005677756,0.000250186,0.000009002173,0.0004889964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001560852,"threshold_uncertainty_score":0.003103554,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002405716208889666,"score_gpt":0.1892930508749165,"score_spread":0.1868873346660268,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}