{"id":"W4416858338","doi":"10.1038/s41522-025-00867-8","title":"Expansion of the plant-parasitic nematode RNA viruses: Unprecedented diversity, intron-bearing viruses, and cross-kingdom evolutionary links","year":2025,"lang":"en","type":"article","venue":"npj Biofilms and Microbiomes","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"National Key Research and Development Program of China","keywords":"Human virome; Host (biology); Viral evolution; Transcriptome; Nematode; Clade; Gene; RNA virus; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002417907,0.000223976,0.0002490135,0.000922388,0.0003773466,0.0005471235,0.000144898,0.0002774807,0.0005795076],"category_scores_gemma":[0.000356226,0.0001482125,0.000255004,0.0007620611,0.0002398805,0.0005533801,0.000542014,0.0004255687,0.0001376227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002309414,"about_ca_system_score_gemma":0.0002115527,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001061084,"about_ca_topic_score_gemma":0.002337849,"domain_scores_codex":[0.9997613,0.00001896682,0.000014385,0.0001240716,0.00003851288,0.00004281219],"domain_scores_gemma":[0.9997385,0.00005326672,0.00009653529,0.00002125949,0.00003995273,0.00005054965],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002117083,0.00004988703,0.5427627,0.0003130877,0.000142133,0.0005648881,0.001402108,0.0004092336,0.4242387,0.0006482727,0.0002863669,0.02897095],"study_design_scores_gemma":[0.000007335394,0.00009300995,0.9811863,0.00004619526,0.00007732223,0.001075463,0.0008627371,0.001512176,0.008270405,0.0003758302,0.006473177,0.00002011301],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969374,0.001160016,0.000747225,0.00002569125,0.000005521629,0.0000061531,0.0005417602,0.00001038043,0.0005659891],"genre_scores_gemma":[0.9951893,0.0007213892,0.001332495,0.00005490885,0.0000120659,0.00001084352,0.002338978,0.000009345268,0.0003305918],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001061084,"threshold_uncertainty_score":0.002109826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03424046494581406,"score_gpt":0.2751530950755025,"score_spread":0.2409126301296884,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}