{"id":"W4417015500","doi":"10.5376/lgg.2025.16.0009","title":"Identification of Key Signaling Genes in Soybean-Rhizobium Interaction","year":2025,"lang":"","type":"article","venue":"Legume Genomics and Genetics","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Regulator; Gene; Signal transduction; Identification (biology); Transcription factor; Nitrogen fixation; Proteomics; Genomics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005220844,0.0002699313,0.00038057,0.0001219296,0.0001758188,0.0001739187,0.0003374968,0.0002828693,0.00005633846],"category_scores_gemma":[0.0000422857,0.000177355,0.0001308023,0.0005875838,0.0001593872,0.0001034059,0.0002173477,0.0002148435,0.00001278463],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001092163,"about_ca_system_score_gemma":0.00005443764,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003081886,"about_ca_topic_score_gemma":0.0003967562,"domain_scores_codex":[0.9977352,0.0001381932,0.00103142,0.0005694429,0.0001613539,0.0003644155],"domain_scores_gemma":[0.9990255,0.0001715858,0.0004019283,0.000166553,0.0001578118,0.00007666515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004593659,0.000122586,0.02800373,0.00008278453,0.00005489512,0.000001179095,0.0004692126,0.00006544558,0.934303,0.0005161955,0.00004405454,0.03629094],"study_design_scores_gemma":[0.0004278827,0.0001967436,0.08432361,0.0001592023,0.0001437438,0.000004357061,0.001457755,0.003399795,0.9032847,0.003177371,0.002998308,0.0004265271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989055,0.008137651,0.00004087216,0.001248413,0.0008663781,0.0003653734,0.00006267435,0.00001267887,0.0002109972],"genre_scores_gemma":[0.9969348,0.001863083,0.0003131104,0.0001676385,0.0001905133,0.00001069513,0.00002566336,0.00000415117,0.0004903016],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05631987,"threshold_uncertainty_score":0.7232326,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0123968677832416,"score_gpt":0.2369627424689451,"score_spread":0.2245658746857034,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}