{"id":"W4417318400","doi":"10.3390/microorganisms13122843","title":"Unveiling Acinetobacter endophylla sp. nov.: A Specialist Endophyte from Peganum harmala with Distinct Genomic and Metabolic Traits","year":2025,"lang":"en","type":"article","venue":"Microorganisms","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Espace pour la vie","funders":"Université Mohammed VI Polytechnique","keywords":"Genome; Secondary metabolite; Gene; Endophyte; Secondary metabolism; Comparative genomics; Phenotype; Bacteria; Transcriptome; Metabolomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001241371,0.0003938772,0.0006696833,0.0001516951,0.0001827847,0.0001244287,0.0001716284,0.0001340006,0.0008278259],"category_scores_gemma":[0.00006307662,0.0002824756,0.00009709821,0.0003594146,0.0001787502,0.00009016733,0.0001225861,0.0003481832,0.0000901754],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006436328,"about_ca_system_score_gemma":0.0001464655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002325817,"about_ca_topic_score_gemma":0.00009523721,"domain_scores_codex":[0.9982835,0.00005004662,0.0003693497,0.0007210401,0.0001493434,0.0004267157],"domain_scores_gemma":[0.9992067,0.00007129986,0.0001123211,0.0003466436,0.0001060271,0.0001570752],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000423718,0.00008892029,0.002332009,0.00007763015,0.0002418134,0.00008697352,0.0002206492,1.274601e-7,0.9849954,0.0001161468,0.00141452,0.01000205],"study_design_scores_gemma":[0.001560542,0.00006406773,0.1417754,0.0001305003,0.0004681838,0.0001186149,0.00006999799,0.000002247979,0.7934769,0.00005662396,0.06200217,0.0002747189],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905307,0.003938006,0.00009716581,0.002705717,0.0002989926,0.0005505605,0.0001972985,0.0000985221,0.001583017],"genre_scores_gemma":[0.9897175,0.0001732425,0.004382264,0.001480937,0.0009299828,0.00000220407,0.00007686829,0.00005427321,0.003182679],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1915185,"threshold_uncertainty_score":0.9999627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007050857306754061,"score_gpt":0.2114417658422584,"score_spread":0.2043909085355043,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}