{"id":"W4417444937","doi":"10.1021/acs.jproteome.5c00649","title":"Global Protein Interaction Network for <i>Trypanosoma cruzi</i>","year":2025,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Proteome; Interaction network; Protein Interaction Networks; Protein–protein interaction; Drug target; Annotation; Genome; Systems biology; Ribosomal protein","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000298728,0.0001172834,0.0003445279,0.0004306061,0.0003049783,0.0001223164,0.0003406007,0.0001297592,0.0001132392],"category_scores_gemma":[0.002439832,0.00009146058,0.000242943,0.001581113,0.0001716709,0.0002372252,0.0001253708,0.0008188352,0.00002855701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006678543,"about_ca_system_score_gemma":0.001509454,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000238327,"about_ca_topic_score_gemma":0.00001433658,"domain_scores_codex":[0.9973585,0.0002098175,0.0005962192,0.0002065574,0.0009542245,0.0006746764],"domain_scores_gemma":[0.9963325,0.0002613771,0.0001647075,0.0003531635,0.002580212,0.0003080578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00493642,0.0006807948,0.002463862,0.0006775807,0.0003129942,0.0000632286,0.00003568534,0.00002719584,0.6926423,0.0123529,0.2568348,0.0289722],"study_design_scores_gemma":[0.005281996,0.004752984,0.2272133,0.002019692,0.00006419529,0.0005482259,0.0003855111,0.0003654345,0.02458522,0.03848025,0.6961151,0.0001880735],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7920973,0.002941788,0.05429805,0.08956156,0.0008274855,0.01257933,0.00008572557,0.00008035621,0.04752844],"genre_scores_gemma":[0.9619135,0.0001533665,0.02425953,0.0002346901,0.001814365,0.0006307736,0.000009738825,0.00002450066,0.01095951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6680571,"threshold_uncertainty_score":0.3729654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08891904664308323,"score_gpt":0.4810996668700082,"score_spread":0.392180620226925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}