{"id":"W4417524400","doi":"10.1016/j.jgg.2025.12.004","title":"Metabolite-QTL analysis reveals genetic basis of phenolic acid metabolism in barley grains","year":2025,"lang":"en","type":"article","venue":"Journal of genetics and genomics/Journal of Genetics and Genomics","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Saint Mary's University","funders":"Ministry of Agriculture and Rural Affairs of the People's Republic of China; Agriculture Research System of China","keywords":"Hordeum vulgare; Phenolic acid; Metabolite; Gene; Population; Quantitative trait locus; Ploidy; Metabolism","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001445397,0.0005073397,0.001725371,0.001734751,0.0001106426,0.00011544,0.0008070917,0.0004815483,0.00001600467],"category_scores_gemma":[0.0001588843,0.0004656529,0.0007962173,0.0008656962,0.0002509093,0.0000184976,0.0003946624,0.0005349409,5.741417e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006900585,"about_ca_system_score_gemma":0.0006013634,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001685575,"about_ca_topic_score_gemma":0.00008436762,"domain_scores_codex":[0.9955631,0.0002856069,0.002725819,0.0004751332,0.000438931,0.0005114221],"domain_scores_gemma":[0.9956354,0.00008023905,0.002315805,0.0006006754,0.0009487931,0.000419054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004129167,0.0001975149,0.02458625,0.00007639352,0.003436924,0.00003552188,0.0004557979,0.01074343,0.9502265,0.00006916174,0.0007364641,0.009023154],"study_design_scores_gemma":[0.006116642,0.001258388,0.2273187,0.0001686243,0.009607809,0.0006669648,0.001119683,0.003459883,0.6699347,0.003261806,0.07589971,0.001187173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8927834,0.1015851,0.004577861,0.0003177825,0.0003266617,0.0001700761,0.0001243689,0.000001419013,0.0001133284],"genre_scores_gemma":[0.8666329,0.1100624,0.02230603,0.0004306257,0.0003535378,0.000001651685,0.00001517501,0.00004299595,0.0001546946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2802918,"threshold_uncertainty_score":0.9997795,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006635398851956626,"score_gpt":0.2435186276048126,"score_spread":0.236883228752856,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}