{"id":"W54969830","doi":"10.1007/978-1-4939-0715-1_11","title":"Next-Generation Sequence Assemblers","year":2014,"lang":"en","type":"book-chapter","venue":"SpringerBriefs in systems biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Sequence (biology); Computer science; Computational biology; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004012313,0.0004270105,0.0005582796,0.0001207481,0.00007291088,0.00003806572,0.000301433,0.0008720155,0.00001356012],"category_scores_gemma":[0.00004816381,0.0004299537,0.000141345,0.00002328124,0.0001679867,6.562298e-7,0.0002268606,0.0002200309,0.00005345866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006454407,"about_ca_system_score_gemma":0.0001028245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001386502,"about_ca_topic_score_gemma":0.0002363472,"domain_scores_codex":[0.9980757,0.00007805506,0.000562031,0.0008176923,0.00009377071,0.0003727932],"domain_scores_gemma":[0.9989466,0.00002309067,0.0002995747,0.0005498567,0.0001061596,0.00007470985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000023722,0.000008833768,0.001308255,0.00009396661,0.0001910199,0.00000761834,0.00002693223,0.0002306506,0.931816,0.06054682,0.001675428,0.004070784],"study_design_scores_gemma":[0.0003419336,0.0003109487,0.0001602968,0.0001010727,0.00003036178,0.00003222619,0.00001080008,0.0001931864,0.003506984,0.0005755587,0.9940519,0.0006847617],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.2335588,0.07476366,0.00388222,0.0003206854,0.01173801,0.002638486,0.0003360773,0.00005856773,0.6727034],"genre_scores_gemma":[0.9190803,0.00291853,0.0001858314,0.000190277,0.002198835,0.00006904623,0.0002748083,0.00008675404,0.07499563],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9923764,"threshold_uncertainty_score":0.9998152,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0676910520608807,"score_gpt":0.268590548884914,"score_spread":0.2008994968240333,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}