{"id":"W641552040","doi":"10.1371/journal.pone.0128272","title":"Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":201,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Genome Canada","keywords":"Pyrosequencing; Bioremediation; Biology; Soil water; Soil microbiology; Microorganism; Microbial population biology; Bacteria; Enrichment culture; Contamination; Isolation (microbiology); Metagenomics; Microbiology; Microbial ecology; Environmental chemistry; Ecology; Chemistry; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007137859,0.0001932491,0.0003554682,0.00005335247,0.0002658109,0.00001948117,0.000349558,0.0002629986,0.0005915501],"category_scores_gemma":[0.0001310135,0.0001756104,0.00003363099,0.0001343109,0.0002190061,0.0001284147,0.0006199152,0.001339831,0.0001006888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002800526,"about_ca_system_score_gemma":0.00001456435,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005837498,"about_ca_topic_score_gemma":0.02790423,"domain_scores_codex":[0.9972322,0.001873482,0.0002376147,0.0002158706,0.0001371908,0.0003036722],"domain_scores_gemma":[0.9991387,0.0001920435,0.00009133228,0.0004020112,0.0000159208,0.0001600119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001296557,0.004328744,0.04192337,0.0000244079,0.0001127796,0.00000950363,0.009021212,0.00007042106,0.9430421,0.00004880554,0.000924634,0.0003643779],"study_design_scores_gemma":[0.007339366,0.001496989,0.6516475,0.0001905904,0.0004975072,0.00009521646,0.006766885,0.001923426,0.3135393,0.01310596,0.001702297,0.001694935],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941664,0.00009518985,0.000127401,0.0002469657,0.00007573493,0.0002924083,0.00001228044,0.00004142302,0.004942155],"genre_scores_gemma":[0.997178,0.000046038,0.001560634,0.000414392,0.00001981952,0.00002684417,0.00005409127,0.00001332823,0.0006868939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6295028,"threshold_uncertainty_score":0.989834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05297023586802155,"score_gpt":0.2747026609984394,"score_spread":0.2217324251304179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}