{"id":"W6885876804","doi":"10.1371/journal.pone.0246443.s010","title":"CNAs were common and genes were more likely to be affected by large deletions than other types of mutations.","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Lesion; Gene; Metastatic lesion; Mutation; Cancer","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00001565694,0.00008227232,0.00009805358,0.00001332288,0.00005268122,0.00001511505,0.00006333133,0.00008747489,0.004099799],"category_scores_gemma":[0.00008178383,0.00008133776,0.00004240733,0.00005954729,0.000006157903,0.000002110248,0.00007070589,0.00003461393,0.00001546989],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005147736,"about_ca_system_score_gemma":0.00005109924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001323418,"about_ca_topic_score_gemma":0.0002642327,"domain_scores_codex":[0.9995329,0.00002423277,0.00009497988,0.0001748038,0.00006618127,0.0001068958],"domain_scores_gemma":[0.9996229,0.00001010235,0.00003692346,0.0001772768,0.0001031125,0.00004970293],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001474772,0.0001039746,0.0004307212,0.000190007,0.00007834464,0.000003647163,0.0002032827,0.0001804571,0.3870021,0.00001035768,0.6083199,0.003462492],"study_design_scores_gemma":[0.0003529124,0.00007611938,0.002001934,0.0002823738,0.00001937423,0.00001160165,0.0001943202,0.0003168751,0.4515406,0.000008620682,0.5450072,0.0001881544],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8625231,0.007639716,0.00004377802,0.0005473338,0.00004312587,0.0001498493,0.1284068,0.00002166424,0.0006246481],"genre_scores_gemma":[0.9243873,0.0000447183,0.0002578481,0.0006906693,0.00008877648,0.00005469393,0.07333942,0.00002424171,0.001112272],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06453847,"threshold_uncertainty_score":0.9968106,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01768686030499363,"score_gpt":0.2805365693969839,"score_spread":0.2628497090919903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}