{"id":"W6888860672","doi":"10.25345/c5c49q","title":"MassIVE MSV000086214 - Confident identification of citrullination and carbamylation assisted by peptide retention time prediction","year":2020,"lang":"en","type":"dataset","venue":"UC San Diego","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Citrullination; Peptide; Identification (biology); Retention time; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008111235,0.0005844565,0.0007409525,0.0006333429,0.0001982135,0.0002004471,0.0003451266,0.0007131749,0.0007095699],"category_scores_gemma":[0.0006711362,0.0006845741,0.000195997,0.0006833867,0.0002398844,0.0005823583,0.0001359005,0.0005337102,0.002095581],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005431615,"about_ca_system_score_gemma":0.0001206338,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000253467,"about_ca_topic_score_gemma":0.0001217482,"domain_scores_codex":[0.9950706,0.0005484001,0.001654914,0.001107591,0.001280582,0.0003379105],"domain_scores_gemma":[0.9954526,0.0001524379,0.002764972,0.0007831173,0.0006438195,0.0002030694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000160297,0.0001259778,0.000117966,0.0003787059,0.0002108208,0.00000639029,0.00009715236,0.00002262545,0.08904321,0.0000201886,0.9094779,0.0003386839],"study_design_scores_gemma":[0.002533083,0.0005414204,0.03746675,0.0007030127,0.002424595,0.00003660344,0.0002055317,0.009286484,0.01359777,0.0003210479,0.9316288,0.00125492],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.004014263,0.0003955009,0.0004220559,0.00007081465,0.0004819112,0.001440743,0.9928406,0.0002165384,0.0001175489],"genre_scores_gemma":[0.02349638,0.0002254589,0.00004622978,0.00002772739,0.0002615911,0.0001369812,0.9751694,0.0001151814,0.0005210351],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.07544544,"threshold_uncertainty_score":0.9995605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01464332182791848,"score_gpt":0.2430776880290068,"score_spread":0.2284343662010883,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}