{"id":"W6888926552","doi":"10.24433/co.9785418.v1","title":"Transposable elements are co-opted as oncogenic regulatory elements by lineage-specific transcription factors in prostate cancer","year":2023,"lang":"en","type":"other","venue":"Code Ocean","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network","funders":"","keywords":"Prostate cancer; Transcription factor; Transposable element; Transcription (linguistics); Genome; Chromoplexy; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000602837,0.001244582,0.001216013,0.00117277,0.0001376365,0.0001066773,0.0007729789,0.0005564781,0.008105038],"category_scores_gemma":[0.00001983532,0.00134842,0.0003448123,0.001150359,0.0001946402,0.0002498043,0.00003056357,0.0008839456,0.003438668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001807472,"about_ca_system_score_gemma":0.0002860977,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000919514,"about_ca_topic_score_gemma":0.01280119,"domain_scores_codex":[0.9938241,0.000297929,0.001423049,0.001661883,0.00136937,0.001423623],"domain_scores_gemma":[0.9974115,0.00003668447,0.001050537,0.001024216,0.00009744123,0.0003795477],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000307253,0.0003681497,0.1245353,0.0003285107,0.0004787609,0.00007826763,0.0008777967,0.00004327295,0.01014762,0.000007832038,0.8624085,0.0004187036],"study_design_scores_gemma":[0.004928681,0.0001080566,0.005582917,0.001614632,0.0002000009,0.000001231115,0.0005515614,0.00007882962,0.009291217,0.00001496843,0.9761743,0.001453604],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.7969913,0.01441526,0.00001351158,0.0001400658,0.00354079,0.01052346,0.1211026,0.007706042,0.04556695],"genre_scores_gemma":[0.1415184,0.006831808,0.0000890166,0.0001262639,0.0004435928,0.0003120562,0.01307579,0.01154825,0.8260548],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7804878,"threshold_uncertainty_score":0.9988965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02865719949120075,"score_gpt":0.2906739674164796,"score_spread":0.2620167679252788,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}