{"id":"W6891639952","doi":"10.48336/e7gs-5173","title":"Prediction of host-pathogen gene expression from dual RNA-seq data during a bacterial infection","year":2024,"lang":"en","type":"article","venue":"Memorial University Research Repository (Memorial University)","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Dual (grammatical number); Gene expression; Gene; Host (biology); Expression (computer science); Pathogen; Dual role; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001463225,0.0005760429,0.0007909031,0.0006355543,0.0002684854,0.0009700333,0.0003583089,0.0007756061,0.0004557564],"category_scores_gemma":[0.002497349,0.0002745465,0.0006368224,0.0005759493,0.0003235611,0.0004413642,0.0004211457,0.0009453195,0.0004008586],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004805503,"about_ca_system_score_gemma":0.0004452696,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001292305,"about_ca_topic_score_gemma":0.002250313,"domain_scores_codex":[0.999498,0.0001083134,0.00003283025,0.0001936659,0.000108192,0.00005887063],"domain_scores_gemma":[0.998552,0.0008515256,0.0001874429,0.00008570031,0.0002351939,0.00008807333],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001675843,0.0003620545,0.1348531,0.0004125555,0.0002734064,0.0003222915,0.0002689689,0.07001714,0.7456345,0.0008986629,0.001293599,0.0439878],"study_design_scores_gemma":[0.00002442759,0.0002644245,0.1076057,0.00003694754,0.0001153688,0.0002041281,0.0002227493,0.7651885,0.1217038,0.002441797,0.002118487,0.00007356415],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.874235,0.0006263466,0.1176261,0.0002699199,0.00005725515,0.00007642451,0.005546967,0.0005960442,0.0009659218],"genre_scores_gemma":[0.923185,0.0002994938,0.06893801,0.0001880931,0.00002404639,0.0001404945,0.00621893,0.0000794364,0.000926558],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001463225,"threshold_uncertainty_score":0.007738352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02856278546976545,"score_gpt":0.2423685233820042,"score_spread":0.2138057379122387,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}