{"id":"W6901748508","doi":"10.60692/g7gj8-kjc48","title":"Genome-Wide SNP Data Revealed the Extent of Linkage Disequilibrium, Persistence of Phase and Effective Population Size in Purebred and Crossbred Buffalo Populations","year":2019,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Purebred; Crossbreed; Linkage disequilibrium; Population; Genotyping; SNP; SNP genotyping; Heritability","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001275774,0.0001610616,0.0003588177,0.0005649374,0.0002756912,0.0003596382,0.0001842827,0.0001767998,0.0007130923],"category_scores_gemma":[0.002023299,0.0001275375,0.0002507544,0.0005943182,0.0002697895,0.000274253,0.0003818752,0.0002808837,0.0001105133],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001199364,"about_ca_system_score_gemma":0.0001444264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001492742,"about_ca_topic_score_gemma":0.0030018,"domain_scores_codex":[0.9993942,0.0001598279,0.00005906797,0.0002644127,0.0000920893,0.00003035986],"domain_scores_gemma":[0.9989018,0.0004298948,0.000280033,0.0001506667,0.0001847265,0.00005285734],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004855382,0.00007823569,0.7220565,0.0001430291,0.0008004786,0.0002783882,0.001349097,0.001334104,0.238001,0.0007197381,0.0001811549,0.03457272],"study_design_scores_gemma":[0.00001449174,0.0001235834,0.9907827,0.00000980682,0.0001405519,0.0002588415,0.0001279236,0.001952602,0.005363462,0.0003399453,0.0008683568,0.00001781242],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958626,0.0002308509,0.003373484,0.00000877567,0.000002793548,0.000005219264,0.0002489925,0.0000108047,0.0002563981],"genre_scores_gemma":[0.9968959,0.0001010022,0.002168621,0.00002044903,0.0000048797,0.0000245452,0.0004942617,0.000009767934,0.0002805438],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001492742,"threshold_uncertainty_score":0.006747067,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03166949481728414,"score_gpt":0.2495294785532373,"score_spread":0.2178599837359531,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}