{"id":"W6901824814","doi":"10.6084/m9.figshare.16767622","title":"Additional file 6 of Global properties of regulatory sequences are predicted by transcription factor recognition mechanisms","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Transcription factor; Transcription (linguistics); Factor (programming language); Identification (biology); DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002381265,0.001275765,0.002002411,0.004029708,0.0007160651,0.002165781,0.002710134,0.001570275,0.8841786],"category_scores_gemma":[0.02521877,0.0008186498,0.001381112,0.004833496,0.0003258643,0.002601883,0.001218838,0.001322812,0.2932483],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001371957,"about_ca_system_score_gemma":0.001900089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00443302,"about_ca_topic_score_gemma":0.00573135,"domain_scores_codex":[0.9990579,0.0001630622,0.0001494945,0.0002676617,0.0002679623,0.00009392388],"domain_scores_gemma":[0.9745508,0.0195085,0.001120497,0.001335573,0.002849702,0.000634938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001990048,0.00002509732,0.0005106304,0.004550709,0.00005004067,0.00006061699,0.00003175081,0.0002902509,0.0001943543,0.0008860756,0.9835873,0.009614037],"study_design_scores_gemma":[0.001164806,0.00009184608,0.006050265,0.002948308,0.0001673303,0.0003527919,0.00009985194,0.0006170325,0.0008116597,0.008997792,0.9786052,0.00009297838],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.00008599104,0.0001904141,0.0005569646,0.0002367093,0.0001036131,0.00004707712,0.996543,0.0006825625,0.001553698],"genre_scores_gemma":[0.004644239,0.0009289102,0.004173388,0.0009604301,0.0003148626,0.0007122317,0.9710256,0.002179654,0.0150605],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8841786,"threshold_uncertainty_score":0.1652052,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01840615519585707,"score_gpt":0.1902743347217457,"score_spread":0.1718681795258886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}