{"id":"W6901863502","doi":"10.6084/m9.figshare.12399242","title":"Additional file 1 of Similar yet different: phylogenomic analysis to delineate Salmonella and Citrobacter species boundaries","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; McGill University; Université Laval; Health Canada","funders":"","keywords":"Salmonella; Citrobacter; Table (database); Enterobacteriaceae; Phenotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001980004,0.001335197,0.001355217,0.003437563,0.001241861,0.00228739,0.00233733,0.001431827,0.8371549],"category_scores_gemma":[0.02594389,0.0007216068,0.001182832,0.0052316,0.0003909904,0.002117131,0.001667391,0.001286816,0.200272],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001020683,"about_ca_system_score_gemma":0.002124825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01000742,"about_ca_topic_score_gemma":0.01652694,"domain_scores_codex":[0.9990985,0.0001569572,0.0001335045,0.0002897297,0.000178776,0.0001425541],"domain_scores_gemma":[0.98028,0.01510067,0.0009149337,0.001085779,0.002062632,0.0005560134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0002622454,0.0000963511,0.003127797,0.0031655,0.00006569936,0.00008242219,0.0001013173,0.000534546,0.0002677568,0.0005850032,0.9857678,0.005943588],"study_design_scores_gemma":[0.004528254,0.0002947511,0.03863344,0.003512169,0.0003527277,0.0006825794,0.0009985049,0.003167834,0.001618419,0.01326606,0.9326985,0.000246828],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0001378028,0.00001176627,0.0002306051,0.00005110353,0.00001508272,0.00003346191,0.9987921,0.0002998484,0.0004282643],"genre_scores_gemma":[0.005604286,0.0001015855,0.004509804,0.0003730919,0.00006198647,0.0009597143,0.9825461,0.001450671,0.004392686],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8371549,"threshold_uncertainty_score":0.2322788,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04333221337906389,"score_gpt":0.2047215461396948,"score_spread":0.1613893327606309,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}