{"id":"W6901887379","doi":"10.6084/m9.figshare.15184835.v1","title":"Additional file 2 of CoCoA-diff: counterfactual inference for single-cell gene expression analysis","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Inference; Counterfactual thinking; Expression (computer science); Gene expression; Feature (linguistics)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000009867602,0.000112094,0.0001557816,0.00003272751,0.00004822418,0.00001917617,0.0001247538,0.0001312349,0.901736],"category_scores_gemma":[0.0008051447,0.000113889,0.0001911922,0.0001197598,0.00001025724,0.000003928783,0.00005737927,0.00004537116,0.00005187934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008327271,"about_ca_system_score_gemma":0.0001152185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001231586,"about_ca_topic_score_gemma":0.00001721171,"domain_scores_codex":[0.9992959,0.00001987346,0.0001686363,0.0002652666,0.0001091241,0.000141226],"domain_scores_gemma":[0.9991096,0.0002349468,0.00009896312,0.0002155764,0.0002886501,0.00005232286],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001702066,0.00007915175,0.000005294282,0.00004106421,0.00003944001,0.000001165392,0.000008669278,0.00004751172,0.4037723,6.790308e-8,0.5958705,0.0001178631],"study_design_scores_gemma":[0.0001503907,0.00006681341,0.00006403649,0.0001063421,0.00001986139,0.000001089566,0.00001020938,0.0001261868,0.5543677,0.00000216061,0.4449961,0.00008910622],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.002267021,0.000103845,0.0001885688,0.000003768725,0.00001876917,0.00007899143,0.9963843,0.000007375805,0.0009473903],"genre_scores_gemma":[0.1035699,0.000002170696,0.002045822,0.00008010922,0.0001236423,0.0002054164,0.892763,0.00001284108,0.001197087],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.9016841,"threshold_uncertainty_score":0.4644257,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02924411902340899,"score_gpt":0.2408216142310604,"score_spread":0.2115774952076515,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}