{"id":"W6902043386","doi":"10.6084/m9.figshare.19745608.v2","title":"Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae","year":2023,"lang":"en","type":"dataset","venue":"London School of Hygiene & Tropical Medicine","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Klebsiella pneumoniae; Typing; Multilocus sequence typing; Table (database); Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00160652,0.001252509,0.003508348,0.000445475,0.0002263278,0.00004213054,0.003370682,0.0007070345,0.0001328994],"category_scores_gemma":[0.00912574,0.0008367719,0.0008755858,0.002131199,0.001608287,0.0001178398,0.001010855,0.001183799,0.0007476644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009719579,"about_ca_system_score_gemma":0.001659869,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002543802,"about_ca_topic_score_gemma":0.009444256,"domain_scores_codex":[0.9904441,0.0008642204,0.003057363,0.001557987,0.002732414,0.001343898],"domain_scores_gemma":[0.9903711,0.001508633,0.002762667,0.003563598,0.00115412,0.0006398644],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001327601,0.0002813656,0.03380169,0.001492296,0.0003605127,0.00005339672,0.00001424379,0.00001925968,0.02122153,0.0001291938,0.9410794,0.0002195574],"study_design_scores_gemma":[0.004231736,0.001028412,0.3738469,0.001161953,0.0006757373,0.00004032212,0.00008828871,0.00001507204,0.0003426681,0.0006485753,0.6172354,0.0006849518],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.1515546,0.003407513,0.00002635694,0.001496924,0.002346206,0.002235087,0.8387491,0.0001394651,0.00004476977],"genre_scores_gemma":[0.07353615,0.002034326,0.0004552033,0.0004304807,0.002695086,0.000332354,0.9195287,0.0004273799,0.0005603202],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.3400452,"threshold_uncertainty_score":0.9994083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01631386717425395,"score_gpt":0.2909825066613547,"score_spread":0.2746686394871007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}