{"id":"W6902051932","doi":"10.6084/m9.figshare.14091249","title":"Additional file 1 of Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Phaser; Nanopore sequencing; File format; Angstrom; Workflow","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002137024,0.002066104,0.002366086,0.002745668,0.001904897,0.002672476,0.004159871,0.001512554,0.7599841],"category_scores_gemma":[0.0127096,0.00135095,0.001429708,0.00529362,0.0004920756,0.002807401,0.001798326,0.00232904,0.2840475],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001288003,"about_ca_system_score_gemma":0.002489102,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005337704,"about_ca_topic_score_gemma":0.01012885,"domain_scores_codex":[0.9990014,0.0001194907,0.0001129406,0.0003640608,0.000245194,0.0001569199],"domain_scores_gemma":[0.9919388,0.005082529,0.0004657916,0.001013686,0.001077741,0.0004214828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003655289,0.00009642713,0.001548267,0.002373809,0.00008092689,0.00007326582,0.00006532257,0.0007751453,0.001455813,0.001255711,0.9850189,0.006890956],"study_design_scores_gemma":[0.001685745,0.0002139649,0.01188655,0.001054236,0.0002066715,0.0003806509,0.000190148,0.002770956,0.006666462,0.0106241,0.9641287,0.0001919175],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"methods","genre_scores_codex":[0.0001457936,0.00001863373,0.0008683029,0.00003818946,0.00002759778,0.00003264855,0.9967513,0.001398476,0.0007191262],"genre_scores_gemma":[0.001608863,0.00005488369,0.004025315,0.0001542293,0.00002734531,0.0003195995,0.9893531,0.002233762,0.002222885],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.7599841,"threshold_uncertainty_score":0.3423536,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03255504609766753,"score_gpt":0.2593894654516272,"score_spread":0.2268344193539596,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}