{"id":"W6902089880","doi":"10.6084/m9.figshare.26569831","title":"Additional file 2 of Genomic and phenotypic profiling of Staphylococcus aureus isolates from bovine mastitis for antibiotic resistance and intestinal infectivity","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Staphylococcus aureus; Infectivity; Mastitis; Antibiotic resistance; Antibiotics; Ceftiofur; Tetracycline; Ampicillin; Phenotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001510134,0.001134169,0.001354433,0.002590823,0.001197894,0.001830315,0.001816852,0.001435264,0.8258727],"category_scores_gemma":[0.01566134,0.0006152047,0.0008373165,0.003453584,0.0003303798,0.001388525,0.001158883,0.0009281992,0.1472453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009716247,"about_ca_system_score_gemma":0.001958224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00677556,"about_ca_topic_score_gemma":0.01226862,"domain_scores_codex":[0.9992579,0.00008131278,0.0001435211,0.0001988137,0.000193927,0.00012447],"domain_scores_gemma":[0.9889441,0.007475035,0.0007132425,0.0007305954,0.001739219,0.0003977866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0006932892,0.0002348037,0.004325743,0.005379213,0.00006849004,0.0002312093,0.0001310124,0.0006357458,0.001470158,0.0007800407,0.9729537,0.01309659],"study_design_scores_gemma":[0.004153809,0.0005270743,0.05130149,0.004315277,0.000240823,0.00111967,0.0007577705,0.002712107,0.003665193,0.007141538,0.9238212,0.0002439773],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0002455655,0.00001802612,0.0002777459,0.00006044304,0.00002488442,0.00005226072,0.9985077,0.0003158808,0.0004975523],"genre_scores_gemma":[0.005764765,0.0001062156,0.003761301,0.0003016753,0.00005717658,0.0008911063,0.9829319,0.0006922476,0.005493589],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.8258727,"threshold_uncertainty_score":0.2483714,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02467863637555285,"score_gpt":0.2251759255725988,"score_spread":0.200497289197046,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}