{"id":"W6902103031","doi":"10.6084/m9.figshare.27872803.v1","title":"Additional file 2 of HIV phylogenetic clusters point to unmet hiv prevention, testing and treatment needs among men who have sex with men in kenya","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Human immunodeficiency virus (HIV); Men who have sex with men; Phylogenetic tree; Population; Point (geometry)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001008863,0.0009678644,0.0009283172,0.002913119,0.001297555,0.001778066,0.001646745,0.001108865,0.8784342],"category_scores_gemma":[0.02577397,0.0005637817,0.0008696089,0.004855463,0.0002762421,0.001720111,0.00121533,0.0008848112,0.1446609],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000896486,"about_ca_system_score_gemma":0.001766292,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02011882,"about_ca_topic_score_gemma":0.03297076,"domain_scores_codex":[0.9994294,0.0001106293,0.00009792623,0.0001379761,0.00009181963,0.0001321337],"domain_scores_gemma":[0.984029,0.01200198,0.0009900358,0.000676338,0.001764991,0.0005376987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0001748323,0.0000394216,0.004330518,0.002004619,0.00003382175,0.00007061405,0.000114714,0.0002227523,0.00006088652,0.0005463092,0.9859552,0.006446477],"study_design_scores_gemma":[0.003729322,0.0002163328,0.1080046,0.008932422,0.0003229472,0.001053626,0.002388177,0.002071949,0.0006341225,0.01508425,0.857385,0.0001772591],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0002212039,0.00001394112,0.00009840869,0.00008328048,0.00002265304,0.00003401572,0.9985619,0.0001191917,0.0008453171],"genre_scores_gemma":[0.01237713,0.0001751384,0.003652131,0.0004709398,0.00009558464,0.0009889191,0.973354,0.0006261612,0.008259998],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8784342,"threshold_uncertainty_score":0.1733988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01896322006679679,"score_gpt":0.2455808191032851,"score_spread":0.2266175990364883,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}