{"id":"W6902121281","doi":"10.6084/m9.figshare.14411534.v1","title":"Additional file 2 of The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"RMIT University; Canadian Food Inspection Agency","keywords":"Pectobacterium; Gene; Pectobacterium carotovorum; Genome; Gene pool; Single-nucleotide polymorphism","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001296519,0.001296144,0.001655048,0.002315988,0.001179722,0.001608222,0.002124515,0.001335295,0.8050429],"category_scores_gemma":[0.01117339,0.0006910214,0.001046736,0.004115155,0.0003722372,0.002076008,0.001214475,0.0013808,0.1542493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009452975,"about_ca_system_score_gemma":0.001609181,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006375993,"about_ca_topic_score_gemma":0.01055641,"domain_scores_codex":[0.9994043,0.00007197518,0.00008047718,0.0001912897,0.0001334026,0.0001186014],"domain_scores_gemma":[0.9935808,0.004330887,0.0004306467,0.0004858912,0.0008107702,0.0003609886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007844795,0.0002259514,0.0044811,0.008943894,0.0001123942,0.0002234047,0.0001847316,0.0009295833,0.002050566,0.001226828,0.9660522,0.01478485],"study_design_scores_gemma":[0.004482748,0.0004981417,0.04389262,0.00244827,0.0002737006,0.0007501332,0.0006568129,0.002792644,0.004548745,0.008162079,0.9312428,0.000251329],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0002500966,0.00001831049,0.0003710822,0.00005185171,0.00002283533,0.00004449104,0.9981393,0.0005444548,0.00055762],"genre_scores_gemma":[0.00493963,0.00009240672,0.00416001,0.0002551838,0.00004851849,0.0005193402,0.9852833,0.001299396,0.003402205],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.8050429,"threshold_uncertainty_score":0.2780826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03852875031509103,"score_gpt":0.1872968431031834,"score_spread":0.1487680927880924,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}