{"id":"W6902135570","doi":"10.6084/m9.figshare.23537653","title":"Additional file 1 of Expanding the application of haplotype-based genomic predictions to the wild: A case of antibody response against Teladorsagia circumcincta in Soay sheep","year":2023,"lang":"en","type":"article","venue":"Open MIND","topic":"Helminth infection and control","field":"Veterinary","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"London Health Sciences Centre; Dalhousie University","funders":"","keywords":"Teladorsagia circumcincta; Antibody response; Antibody; Selection (genetic algorithm); Immune system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006459303,0.00008396291,0.0001637895,0.0001872551,0.0001160673,0.00001883826,0.0002713922,0.00005267507,0.08912614],"category_scores_gemma":[0.000524449,0.00006122365,0.000065637,0.0005752559,0.00007586549,0.0000676174,0.0001085787,0.0001031471,0.0003494518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004541254,"about_ca_system_score_gemma":0.0001863053,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001970551,"about_ca_topic_score_gemma":0.0002847038,"domain_scores_codex":[0.9989487,0.0002452953,0.0003744415,0.0001838018,0.0001215457,0.0001262503],"domain_scores_gemma":[0.9976957,0.001623173,0.0001831014,0.0003904144,0.00007053468,0.00003705963],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.007204164,0.0008992251,0.001622937,0.0000799798,0.0002742537,0.000318416,0.007177318,0.008010544,0.3751425,0.00006598862,0.3972909,0.2019139],"study_design_scores_gemma":[0.002483559,0.001190201,0.1727505,0.0005649263,0.00008620344,0.0003038916,0.005594136,0.07733365,0.003541663,0.00003804769,0.7357301,0.0003830883],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8835863,0.000004068562,0.0005338804,0.0004607235,0.00004603584,0.001081314,0.1123491,0.000005932586,0.001932649],"genre_scores_gemma":[0.9965129,6.433436e-7,0.0002267154,0.00006337679,0.0000319202,0.0005456882,0.002329017,0.00001301412,0.0002766835],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3716008,"threshold_uncertainty_score":0.9117065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04481651745895566,"score_gpt":0.3535582851985088,"score_spread":0.3087417677395531,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}