{"id":"W6902326732","doi":"10.6084/m9.figshare.29105692","title":"Additional file 1 of RobusTAD: reference panel based annotation of nested topologically associating domains","year":2025,"lang":"en","type":"article","venue":"Figshare","topic":"Robotics and Automated Systems","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Annotation; Domain (mathematical analysis); Class (philosophy); Scheme (mathematics)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00180964,0.001950138,0.00200849,0.003345167,0.001434311,0.00275593,0.003643559,0.00194849,0.829749],"category_scores_gemma":[0.01515374,0.001170845,0.001244252,0.004967859,0.0005332791,0.002963857,0.002500057,0.00164058,0.4093193],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001246577,"about_ca_system_score_gemma":0.001914669,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005698516,"about_ca_topic_score_gemma":0.009406557,"domain_scores_codex":[0.9988457,0.0001675967,0.0001279096,0.0003895244,0.0003236294,0.0001456244],"domain_scores_gemma":[0.9905686,0.00587526,0.0004517469,0.001213507,0.001503717,0.0003871983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002537419,0.0000384387,0.000593851,0.001751886,0.00002388936,0.0000679251,0.00005807155,0.0003456627,0.0006290528,0.00112443,0.9881641,0.006948989],"study_design_scores_gemma":[0.0007280009,0.00007987157,0.004653481,0.0008709145,0.00008689876,0.0003452455,0.0001689382,0.001007029,0.002746566,0.007720974,0.9814727,0.0001192942],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.0001190004,0.00004087083,0.001580868,0.00007231429,0.00006059061,0.0000451585,0.993571,0.002475456,0.00203464],"genre_scores_gemma":[0.003169465,0.0001192702,0.007659931,0.0002446177,0.00006404077,0.0004953092,0.9781532,0.004015492,0.006078708],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.170251,"threshold_uncertainty_score":0.2428423,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03653080438835416,"score_gpt":0.2276044128238912,"score_spread":0.1910736084355371,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}