{"id":"W6902569915","doi":"10.6084/m9.figshare.7421903.v1","title":"Additional file 1: of Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective","year":2018,"lang":"en","type":"article","venue":"Figshare","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Outbreak; Perspective (graphical); Escherichia coli; Escherichia coli Proteins; Enterobacteriaceae","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002929653,0.001292944,0.001093191,0.004089656,0.00188429,0.001621216,0.002057052,0.0009208307,0.7751179],"category_scores_gemma":[0.0260738,0.0006964079,0.001269545,0.005459844,0.0004128453,0.001326959,0.001091974,0.0009170473,0.1021526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002835531,"about_ca_system_score_gemma":0.006485584,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1320819,"about_ca_topic_score_gemma":0.1895759,"domain_scores_codex":[0.998923,0.0001368272,0.0001336209,0.0002296209,0.0003756613,0.0002012203],"domain_scores_gemma":[0.9812725,0.01138891,0.0007391874,0.001202179,0.004728632,0.0006686302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005251477,0.0001272177,0.004297936,0.002988154,0.00007917325,0.000103425,0.0001530958,0.0008275668,0.0006742889,0.0006316869,0.9780967,0.01149567],"study_design_scores_gemma":[0.003999313,0.0004067882,0.09574533,0.003981991,0.0004533707,0.0005020506,0.001180065,0.003689685,0.00485997,0.005246661,0.879592,0.0003427689],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"other","genre_scores_codex":[0.0002432134,0.000007545923,0.0002834497,0.00004111086,0.00001182218,0.00009682086,0.9981155,0.0003158107,0.0008846983],"genre_scores_gemma":[0.007496476,0.00008717977,0.006823094,0.0002722917,0.00003231973,0.001304248,0.9755966,0.001240772,0.007147009],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.8679181,"threshold_uncertainty_score":0.320767,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0489525295080951,"score_gpt":0.2979564779983182,"score_spread":0.2490039484902231,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}