{"id":"W6902631549","doi":"10.6084/m9.figshare.c.3625931","title":"Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population","year":2016,"lang":"en","type":"other","venue":"Figshare","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Prophage; Genome; Whole genome sequencing; Campylobacter jejuni; Reference genome; Multilocus sequence typing; Population; Outbreak; Genomics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002761532,0.0003201554,0.000323426,0.001292051,0.0004493538,0.0006765862,0.000260124,0.0003935428,0.0008154114],"category_scores_gemma":[0.000548045,0.0001397067,0.000327451,0.001730593,0.000321914,0.0001402324,0.0004808879,0.0003468044,0.0001471474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007977833,"about_ca_system_score_gemma":0.0007546735,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0335516,"about_ca_topic_score_gemma":0.07025126,"domain_scores_codex":[0.9997777,0.00001157704,0.000008105086,0.00009511437,0.00004812408,0.00005937772],"domain_scores_gemma":[0.9996706,0.00005817074,0.00006707432,0.00002636388,0.0001133033,0.00006438459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005042406,0.00009278505,0.2348224,0.0002240223,0.0002149863,0.0004798533,0.001431346,0.00179447,0.740073,0.0001843445,0.0005502994,0.01962827],"study_design_scores_gemma":[0.0000105998,0.0001249574,0.9875965,0.00001299724,0.0001329721,0.0003509811,0.0006555771,0.00112778,0.007886332,0.00006552318,0.002025316,0.00001046515],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964666,0.0001536795,0.0006964914,0.0000217999,0.000002086847,0.00002698831,0.002129621,0.00001818151,0.0004844492],"genre_scores_gemma":[0.9889209,0.0001917561,0.002849708,0.00006006688,0.000005323567,0.00003302848,0.007350209,0.00002305742,0.0005658079],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0335516,"threshold_uncertainty_score":0.06671262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04680604097105495,"score_gpt":0.2721705230478647,"score_spread":0.2253644820768098,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}