{"id":"W6903047025","doi":"10.1021/acs.est.7b00894.s001","title":"How\\nDoes Reference Site Selection Influence Interpretation of Omics Data?:\\nEvaluating Liver Transcriptome Responses in Male Rainbow Darter (&lt;i&gt;Etheostoma caeruleum&lt;/i&gt;) across an Urban Environment","year":2017,"lang":"en","type":"article","venue":"Figshare","topic":"Environmental Toxicology and Ecotoxicology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Transcriptome; Watershed; Selection (genetic algorithm); Urban stream; Fish <Actinopterygii>; Upstream (networking); Upstream and downstream (DNA)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005557296,0.0003755866,0.0006396503,0.0008688292,0.0008653294,0.002409182,0.000798553,0.0005834295,0.0009745994],"category_scores_gemma":[0.005986763,0.0003157974,0.0004805857,0.001238879,0.001212392,0.0007998213,0.001393733,0.0003589051,0.0005818099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009487559,"about_ca_system_score_gemma":0.001203266,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01721867,"about_ca_topic_score_gemma":0.07347199,"domain_scores_codex":[0.9965481,0.001248402,0.0002444584,0.0008647802,0.0008467968,0.0002474254],"domain_scores_gemma":[0.9969149,0.00100259,0.0005448888,0.0005096933,0.00092383,0.0001041065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006512488,0.00009559934,0.5506882,0.0007815626,0.0009191805,0.000350578,0.002430375,0.001179182,0.3655796,0.0008202525,0.003160013,0.07334412],"study_design_scores_gemma":[0.00002473897,0.000161255,0.9429724,0.0001288246,0.0002402347,0.0002198554,0.001723769,0.00209844,0.03924784,0.0007775679,0.01235144,0.00005359517],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9546741,0.002515112,0.03209719,0.001289692,0.0002590093,0.0001528416,0.00306199,0.0002632512,0.005686685],"genre_scores_gemma":[0.9600511,0.001482542,0.02824835,0.002194806,0.0001023225,0.0001812754,0.004792824,0.0003490448,0.002597686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01721867,"threshold_uncertainty_score":0.03423691,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0484591736178485,"score_gpt":0.2950202626460513,"score_spread":0.2465610890282028,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}