{"id":"W6903156490","doi":"10.1021/acs.jctc.6b00631.s001","title":"Evaluation of Methods for the Calculation of the p&lt;i&gt;K&lt;/i&gt;&lt;sub&gt;a&lt;/sub&gt; of Cysteine Residues in Proteins","year":2016,"lang":"en","type":"article","venue":"Figshare","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Cysteine; Residue (chemistry); Solvation; Amino acid residue; Amino acid; Solvent; Reactivity (psychology); Thiol","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01041336,0.001758547,0.001125195,0.001957333,0.001069924,0.00189294,0.002960613,0.001531659,0.009491736],"category_scores_gemma":[0.03835825,0.0006002311,0.001556174,0.001365064,0.0007683076,0.001750829,0.002115101,0.002108714,0.00377986],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001586947,"about_ca_system_score_gemma":0.004168057,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005491418,"about_ca_topic_score_gemma":0.004096294,"domain_scores_codex":[0.9925805,0.002191502,0.0005230294,0.0006646409,0.00377249,0.0002678523],"domain_scores_gemma":[0.974229,0.01384429,0.001175623,0.002225219,0.008075759,0.0004500582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001168355,0.000658534,0.006851259,0.002046286,0.0005028499,0.0002380073,0.0003829072,0.1077982,0.02811203,0.04090288,0.0194827,0.7918561],"study_design_scores_gemma":[0.000183329,0.0004630019,0.003394344,0.0003386737,0.0001026559,0.000242228,0.0001931902,0.915036,0.04691339,0.01187456,0.02114186,0.0001168417],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.01493714,0.001254839,0.971283,0.0002990193,0.0002868311,0.0005015022,0.0006440496,0.005684691,0.005108981],"genre_scores_gemma":[0.08271474,0.0009004758,0.9067923,0.0001433458,0.00006884302,0.001270156,0.001553804,0.001828471,0.004727892],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01041336,"threshold_uncertainty_score":0.05507177,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03330136471455567,"score_gpt":0.3246203172400935,"score_spread":0.2913189525255379,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}