{"id":"W6903616231","doi":"10.11575/prism/35097","title":"A pipeline of programs for collecting and analyzing group II intron retroelement sequences from GenBank","year":2013,"lang":"en","type":"other","venue":"University of Calgary","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"GenBank; Pipeline (software); Group (periodic table); Intron; Sequence (biology)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002283381,0.0002507602,0.0006386712,0.0004337286,0.0001360872,0.00001091097,0.0002874652,0.0002478702,0.0009012304],"category_scores_gemma":[0.00003365341,0.000286321,0.0001465765,0.0002620475,0.0003155629,0.00008011422,0.0002508688,0.0001540605,0.00001004354],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001617209,"about_ca_system_score_gemma":0.00008100467,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02050748,"about_ca_topic_score_gemma":0.004452641,"domain_scores_codex":[0.9987366,0.00007901933,0.0002314678,0.0004212842,0.0002677027,0.0002639601],"domain_scores_gemma":[0.9986908,0.00007076628,0.0007681904,0.0002553134,0.0001217998,0.00009311394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008400762,0.0005402666,0.01321603,0.0011993,0.002015601,0.00002892951,0.002608197,0.000005295902,0.007326156,0.0007933276,0.9124842,0.05894263],"study_design_scores_gemma":[0.00675048,0.00161687,0.001010563,0.002541368,0.001962118,0.000003635342,0.003742452,0.01253757,0.0004763201,0.0003863884,0.9678166,0.001155656],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.210939,0.01713927,0.05838754,0.0002477476,0.0007263221,0.01497413,0.00403363,0.001306028,0.6922463],"genre_scores_gemma":[0.0344943,0.0006213892,0.2405402,0.00002376379,0.0004094212,0.0000072,0.002512884,0.0008417419,0.7205492],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.1821526,"threshold_uncertainty_score":0.9999589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01583493935653061,"score_gpt":0.2176310633183468,"score_spread":0.2017961239618162,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}