{"id":"W6903616231","doi":"10.11575/prism/35097","title":"A pipeline of programs for collecting and analyzing group II intron retroelement sequences from GenBank","year":2013,"lang":"en","type":"other","venue":"University of Calgary","topic":"","field":"","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"GenBank; Pipeline (software); Group (periodic table); Intron; Sequence (biology)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003031146,0.003817695,0.00177927,0.0052167,0.001958996,0.003088961,0.002995371,0.001083574,0.07352741],"category_scores_gemma":[0.006120942,0.002244748,0.00173424,0.003158216,0.0005912678,0.001892656,0.002069506,0.002563591,0.07784214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001155455,"about_ca_system_score_gemma":0.00264924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01093374,"about_ca_topic_score_gemma":0.01642232,"domain_scores_codex":[0.998667,0.0001538192,0.0001453365,0.0005556974,0.0002953339,0.000182719],"domain_scores_gemma":[0.9982466,0.0006024538,0.0001529646,0.0004208839,0.0004218423,0.0001553401],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001152541,0.0002057105,0.005187109,0.001525499,0.0002697742,0.0003425582,0.000831661,0.001421795,0.04319425,0.003318634,0.721933,0.2206174],"study_design_scores_gemma":[0.0007045353,0.0001362874,0.01057043,0.0003593025,0.0002802512,0.0007136224,0.0002925171,0.02534204,0.08863782,0.007584711,0.8650951,0.0002834152],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"methods","genre_scores_codex":[0.005532256,0.0003914908,0.2475753,0.0002440566,0.0001765306,0.0007766884,0.1553677,0.5767562,0.01317981],"genre_scores_gemma":[0.01376597,0.0004647965,0.4990933,0.0003891502,0.00007378568,0.001968303,0.3765083,0.08584408,0.02189228],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.07352741,"threshold_uncertainty_score":0.2459737,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01583493935653061,"score_gpt":0.2176310633183468,"score_spread":0.2017961239618162,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}